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change the command line option of pileup
2010-07-09 Heng Lichange the command line option of pileup
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2010-07-09 Heng Limake pileup work with CIGAR with I/D at the beginning...
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2010-07-09 Heng Li * make tview more friendly
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2010-07-08 Heng Li * samtools-0.1.7-r607
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2010-07-08 Heng Liremoved a debugging example
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2010-07-08 Heng Li * samtools-.1.7-18 (r605)
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2010-07-02 Heng Lifixed a minor bug in idxstats
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2010-06-16 Heng Lifixed a minor bug in indexing
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2010-06-15 Heng Lichange printf() to puts in exporting
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2010-06-14 Heng Liminor fix. No actual effect.
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2010-06-14 Heng Liadded Makefile targets to compile shared/dynamic library
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2010-06-13 Heng Li * samtools-0.1.7-17 (r596)
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2010-06-13 Heng Li * samtools-0.1.7-16 (r595)
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2010-06-13 Heng Lifixed a bug for unmapped sequences in indexing
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2010-06-12 Heng Lirename iterf as iter
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2010-06-12 Heng Li * samtools-0.1.7-15 (r592)
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2010-06-12 Heng Li * samtools-0.1.7-14 (r591)
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2010-06-12 Heng Li * samtools-0.1.7-13 (r590)
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2010-06-12 Heng Li * samtools-0.1.7-12 (r589)
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2010-06-11 Heng Li * samtools-0.1.7-11 (r588)
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2010-06-11 Heng Li * samtools-0.1.7-10 (r587)
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2010-06-11 Heng Li * samtools-0.1.7-9 (r586)
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2010-06-11 Heng Li * samtools-0.1.7-8 (r585)
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2010-06-11 Heng Li * samtools-0.1.7-7 (r584)
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2010-02-24 Heng LiUpdated export2sam.pl by Chris Saunders from Illumina.
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2010-02-11 Heng Liadded a hidden option in pileup to output the base...
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2010-02-01 Heng Li * samtools-0.1.7-6
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2009-12-14 Heng Li * samtools-0.1.7-5 (r528)
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2009-12-01 Heng Li * samtools-0.1.7-4 (r522)
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2009-12-01 Heng Li * samtools-0.1.7-3 (r521)
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2009-12-01 Heng Li * samtools-0.1.7-2 (r520)
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2009-11-27 Heng Lianother example program
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2009-11-27 Heng Li * samtools-0.1.7-1 (r515)
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2009-11-16 Heng LiUpdate Makefile.mingw for the same reason
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2009-11-16 Heng LiFixed a bug in compiling razip
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2009-11-10 Heng LiRelease samtools-0.1.7 (r510)
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2009-11-06 Heng Li * samtools-0.1.6-22 (r509)
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2009-11-06 Heng Li * samtools-0.1.6-21 (r508)
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2009-10-26 Heng Li * samtools-0.1.6-19 (r494)
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2009-10-26 Heng Li * samtools-0.1.6-18 (r493)
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2009-10-24 Heng Li * BUGGY VERSION
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2009-10-24 Heng Li * BUGGY VERSION
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2009-10-24 Heng Li * BUGGY VERSION. Please NOT use it.
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2009-10-24 Heng Li * This revision is SERIOUSLY BUGGY. Please NOT use it.
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2009-10-19 Heng Li * samtools-0.1.6-17 (r484)
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2009-10-19 Heng Li * samtools-0.1.6-16 (r483)
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2009-10-19 Heng Li * samtools-0.1.6-15 (r482)
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2009-10-18 Heng Li * samtools-0.1.6-14 (r480)
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2009-10-18 Heng Liadded a small unitity to parse SRA XML files
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2009-10-18 Heng Li * samtools-0.1.6-13 (r479)
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2009-10-14 Heng Li * samtools-0.1.6-12 (r478)
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2009-10-10 Heng Li * samtools-0.1.6-11 (r477)
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2009-10-08 Heng LiUnfinished modification. Please do not use this revision...
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2009-10-02 Heng LiClarify the meaning of a region like "chr2:1,000,000".
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2009-10-02 Heng LiFixed minor bugs in novo2sam.pl (on behalf of Ken Chen...
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2009-09-29 Heng Li * samtools-0.1.6-9 (r470)
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2009-09-29 Heng Li * samtools-0.1.6-9 (r469)
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2009-09-28 Heng Li * samtools-0.1.6-7 (r468)
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2009-09-24 Heng Li * samtools-0.1.6-6 (r466)
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2009-09-16 Heng Li * samtools-0.1.6-5 (r462)
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2009-09-09 Heng Lifixed a formatting issue
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2009-09-08 Heng Li * samtools-0.1.6-4 (r459)
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2009-09-07 Heng Li * samtools-0.1.6-2 (r458)
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2009-09-05 Heng Li * samtools-0.1.6-2 (r457)
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2009-09-02 Heng LiRelease samtools-0.1.6
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2009-09-02 Heng Li * samtools-0.1.5-34 (r451)
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2009-09-02 Heng Li * samtools-0.1.5-33 (r450)
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2009-08-29 Heng Li * samtools-0.1.5-32 (r449)
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2009-08-19 Heng Li * samtools-0.1.5-31 (r448)
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2009-08-17 Heng Li * samtools-0.1.5-30 (r447)
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2009-08-17 Heng Li *
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2009-08-11 Heng Li * samtools-0.1.5-28 (r444)
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2009-08-11 Heng Li * samtools-0.1.5-27 (r443)
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2009-08-07 Heng Li * samtools-0.1.5-26 (r442)
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2009-08-05 Heng Li * samtools-0.1.5-25 (r436)
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2009-08-04 Heng Lifixed a SERIOUS bug in setting 0x20 flag
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2009-08-04 Heng Lifixed two minor bugs (suggested by Tim M Storm)
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2009-08-04 Heng Li * samtools-0.1.5-24 (r435)
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2009-08-03 Heng Li * samtools-0.1.5-23 (r434)
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2009-08-02 Heng Li * tried to fixed the buggy FTP random access in Windows...
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2009-08-01 Heng Li * samtools-0.1.5-22 (r432)
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2009-08-01 Heng Lireplace the GnuWin32 version of libz.a with my own...
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2009-08-01 Heng Liadd comments
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2009-08-01 Heng Li * samtools-0.1.5-21 (r428)
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2009-07-31 Heng Lisimplify MinGW Makefile
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2009-07-31 Heng Li * samtools-0.1.5-20 (r427)
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2009-07-31 Heng Li * samtools-0.1.5-19 (r426)
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2009-07-31 Heng Licompatible with Windows binary files
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2009-07-31 Heng Li * samtools-0.1.5-18 (r423)
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2009-07-30 Heng Liconvert BLAT psl to SAM.
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2009-07-30 Heng Li * samtools-0.1.5-17 (r422)
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2009-07-30 Heng Li * samtools-0.1.5-16 (r421)
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2009-07-29 Heng Lido not set "read 1" if reads are not mapped in the...
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2009-07-28 Heng Li * samtools-0.1.5-15 (r419)
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2009-07-24 Heng Liskip @header lines in SAM
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2009-07-24 Heng Li * samtools-0.1.5-14 (r417)
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2009-07-24 Heng Li * samtools-0.1.5-17 (r416)
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2009-07-24 Heng Li * samtools-0.1.5-12 (r415)
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2009-07-22 Heng Lifixed a compiling error (thank Ken for fixing it)
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2009-07-21 Heng LiImplemented Boyer-Moore search in the kstring library.
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