git.donarmstrong.com Git - samtools.git/history

]> git.donarmstrong.com Git - samtools.git/history - kaln.c

2010-11-08	Heng Li	indel calling is apparently working, but more informati...	blob \| commitdiff \| raw
2010-11-08	Heng Li	prepare for the indel caller. It is not ready yet.	blob \| commitdiff \| raw \| diff to current
2010-11-02	Heng Li	Separate kaln and kprobaln as I am preparing further...	blob \| commitdiff \| raw \| diff to current
2010-10-19	Heng Li	* Minor code changes. No real effect.	blob \| commitdiff \| raw \| diff to current
2010-10-05	Heng Li	* removed a comment line in kaln.c	blob \| commitdiff \| raw \| diff to current
2010-10-01	Heng Li	I am changing the gap open probability back to 0.001...	blob \| commitdiff \| raw \| diff to current
2010-10-01	Heng Li	* samtools-0.1.8-17 (r760)	blob \| commitdiff \| raw \| diff to current
2010-09-30	Heng Li	round to the nearest integer	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	I was trying to accelerate ka_prob_glocal() as this...	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	this is interesting. multiplication is much faster...	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	minor changes	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	prob_realn() seems working!	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	minor	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	Convert phredQ to probabilities	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	Implement the glocal HMM; discard the extention HMM	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	improve numerical stability	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	more comments	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	fixed a bug in banded DP	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	* fixed that weird issue.	blob \| commitdiff \| raw \| diff to current
2010-09-28	Heng Li	More comments. This version seems working, but somethin...	blob \| commitdiff \| raw \| diff to current
2010-09-27	Heng Li	A little code cleanup. Now the forward and backback...	blob \| commitdiff \| raw \| diff to current
2010-09-27	Heng Li	...	blob \| commitdiff \| raw \| diff to current
2010-09-14	Heng Li	* aggressive gapped aligner is implemented in calmd.	blob \| commitdiff \| raw \| diff to current
2009-10-24	Heng Li	* This revision is SERIOUSLY BUGGY. Please NOT use it.	blob \| commitdiff \| raw \| diff to current
2009-10-14	Heng Li	* samtools-0.1.6-12 (r478)	blob \| commitdiff \| raw \| diff to current
2009-10-08	Heng Li	Unfinished modification. Please do not use this revision...	blob \| commitdiff \| raw \| diff to current

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