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]> git.donarmstrong.com Git - samtools.git/history - bcftools/bcf.c

2012-07-03	Petr Danecek	Bug fixes	blob \| commitdiff \| raw
2012-07-02	Petr Danecek	Alternative model for multiallelic and rare-variant...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Petr Danecek	Merge remote branch 'main/master'	blob \| commitdiff \| raw \| diff to current
2012-03-29	Heng Li	Merge branch 'master' of github.com:samtools/samtools...	blob \| commitdiff \| raw \| diff to current
2012-03-20	Heng Li	Merge branch 'master' into mt	blob \| commitdiff \| raw \| diff to current
2012-03-18	Heng Li	updated with the latest bgzf library	blob \| commitdiff \| raw \| diff to current
2012-03-09	Heng Li	On behalf of Petr: multi-allelic GT	blob \| commitdiff \| raw \| diff to current
2012-02-08	Heng Li	changes from git	blob \| commitdiff \| raw \| diff to current
2011-04-17	Heng Li	* fixed a bug in bedidx: input BED not sorted	blob \| commitdiff \| raw \| diff to current
2011-02-25	Heng Li	* change the order of PL/GL according to the latest...	blob \| commitdiff \| raw \| diff to current
2011-02-24	Heng Li	* automatically fix errors in GL	blob \| commitdiff \| raw \| diff to current
2010-12-03	Heng Li	more informative error message	blob \| commitdiff \| raw \| diff to current
2010-12-02	Heng Li	* samtools-0.1.11-1 (r858)	blob \| commitdiff \| raw \| diff to current
2010-11-10	Heng Li	fixed a typo	blob \| commitdiff \| raw \| diff to current
2010-11-10	Heng Li	use zlib for direct reading when BCF_LITE is in use	blob \| commitdiff \| raw \| diff to current
2010-11-09	Heng Li	* samtools-0.1.9-6 (r803)	blob \| commitdiff \| raw \| diff to current
2010-10-29	Heng Li	* samtools-0.1.9-1 (r786)	blob \| commitdiff \| raw \| diff to current
2010-10-29	Heng Li	Optionally output "DP", the individual read depth	blob \| commitdiff \| raw \| diff to current
2010-10-12	Heng Li	a minor change	blob \| commitdiff \| raw \| diff to current
2010-10-12	Heng Li	* vcfutils.pl: fixed a typo in help message	blob \| commitdiff \| raw \| diff to current
2010-10-03	Heng Li	* vcfutils.pl qstats: calculate marginal ts/tv	blob \| commitdiff \| raw \| diff to current
2010-09-17	Heng Li	* added comments	blob \| commitdiff \| raw \| diff to current
2010-09-17	Heng Li	* put n_smpl to "bcf1_t" to simplify API a little	blob \| commitdiff \| raw \| diff to current
2010-09-01	Heng Li	* fixed bugs in parsing VCF	blob \| commitdiff \| raw \| diff to current
2010-09-01	Heng Li	Write the correct ALT and PL in the SNP calling mode.	blob \| commitdiff \| raw \| diff to current
2010-08-23	Heng Li	print QUAL as floating numbers	blob \| commitdiff \| raw \| diff to current
2010-08-17	Heng Li	use float for QUAL	blob \| commitdiff \| raw \| diff to current
2010-08-14	Heng Li	faster for large sample size (in principle)	blob \| commitdiff \| raw \| diff to current
2010-08-09	Heng Li	do not print refname if file is converted from VCF	blob \| commitdiff \| raw \| diff to current
2010-08-09	Heng Li	* fixed a bug in kstrtok@kstring.c	blob \| commitdiff \| raw \| diff to current
2010-08-09	Heng Li	* improved kstring (added kstrtok)	blob \| commitdiff \| raw \| diff to current
2010-08-05	Heng Li	* the code base is stablized again.	blob \| commitdiff \| raw \| diff to current
2010-08-05	Heng Li	* added prelimiary VCF parser (not finished)	blob \| commitdiff \| raw \| diff to current
2010-08-04	Heng Li	* allow to set min base q	blob \| commitdiff \| raw \| diff to current
2010-08-04	Heng Li	move bcftools to samtools	blob \| commitdiff \| raw \| diff to current

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