* allow to change the compression level in BAM output

[samtools.git] / bcftools / prob1.h

diff --git a/bcftools/prob1.h b/bcftools/prob1.h
index eb4dc9216c27358712c98ec6444f5ea249ad6242..3f89dda5fafb59278e8e60cadcd82fe46fb0eaf0 100644 (file)
--- a/bcftools/prob1.h
+++ b/bcftools/prob1.h
@@ -7,10 +7,10 @@ struct __bcf_p1aux_t;
 typedef struct __bcf_p1aux_t bcf_p1aux_t;
 
 typedef struct {
-       int rank0;
+       int rank0, perm_rank; // NB: perm_rank is always set to -1 by bcf_p1_cal()
        double f_em, f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
        double cil, cih;
-       double pc[4];
+       double cmp[3], p_chi2; // used by contrast2()
        double g[3];
 } bcf_p1rst_t;