* added BED support to samtools view and mpileup and bcftools view

[samtools.git] / bcftools / main.c

diff --git a/bcftools/main.c b/bcftools/main.c
index 7ffc2a05f4557a1aa12a156a86dc2e15cf51ead3..26377e18e1ae93a9dce32822e61cf73cedb8755a 100644 (file)
--- a/bcftools/main.c
+++ b/bcftools/main.c
@@ -5,6 +5,7 @@
 
 int bcfview(int argc, char *argv[]);
 int bcf_main_index(int argc, char *argv[]);
+int bcf_main_pwld(int argc, char *argv[]);
 
 #define BUF_SIZE 0x10000
 
@@ -55,7 +56,8 @@ int main(int argc, char *argv[])
        }
        if (strcmp(argv[1], "view") == 0) return bcfview(argc-1, argv+1);
        else if (strcmp(argv[1], "index") == 0) return bcf_main_index(argc-1, argv+1);
-       else if (strcmp(argv[1], "cat") == 0) return bcf_cat(argc-2, argv+2);
+       else if (strcmp(argv[1], "ld") == 0) return bcf_main_pwld(argc-1, argv+1);
+       else if (strcmp(argv[1], "cat") == 0) return bcf_cat(argc-2, argv+2); // cat is different ...
        else {
                fprintf(stderr, "[main] Unrecognized command.\n");
                return 1;