ret = 1;
goto depad_end;
}
/* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
if ((out = samopen(fn_out? fn_out : "-", out_mode, in->header)) == 0) {
ret = 1;
goto depad_end;
}
/* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
if ((out = samopen(fn_out? fn_out : "-", out_mode, in->header)) == 0) {