bcftools/Makefile

   1 CC=                     gcc
   2 CFLAGS=         -g -Wall -O2 #-fPIC #-m64 #-arch ppc
   3 DFLAGS=         -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
   4 LOBJS=          bcf.o bcfutils.o prob1.o index.o
   5 OMISC=          ..
   6 AOBJS=          vcfout.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
   7 PROG=           bcftools
   8 INCLUDES=       -I..
   9 SUBDIRS=        .
  10
  11 .SUFFIXES:.c .o
  12
  13 .c.o:
  14                 $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
  15
  16 all-recur lib-recur clean-recur cleanlocal-recur install-recur:
  17                 @target=`echo $@ | sed s/-recur//`; \
  18                 wdir=`pwd`; \
  19                 list='$(SUBDIRS)'; for subdir in $$list; do \
  20                         cd $$subdir; \
  21                         $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
  22                                 INCLUDES="$(INCLUDES)" LIBPATH="$(LIBPATH)" $$target || exit 1; \
  23                         cd $$wdir; \
  24                 done;
  25
  26 all:$(PROG)
  27
  28 lib:libbcf.a
  29
  30 libbcf.a:$(LOBJS)
  31                 $(AR) -cru $@ $(LOBJS)
  32
  33 bcftools:lib $(AOBJS)
  34                 $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -lbcf
  35
  36 bcf.o:bcf.h
  37 prob1.o:prob1.h bcf.h
  38 vcfout.o:bcf.h prob1.h
  39 main.o:bcf.h
  40
  41 bcf.pdf:bcf.tex
  42                 pdflatex bcf
  43
  44 cleanlocal:
  45                 rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a bcf.aux bcf.log bcf.pdf *.class libbcf.*.dylib libbcf.so*
  46
  47 clean:cleanlocal-recur