my ($fn, $dir, $suf) = fileparse($0);
my $command = "";
-$command = $dir."rsem-for-ebseq-calculate-clustering-info $k $ARGV[0] $ARGV[1].ump";
+$command = $dir."EBSeq/rsem-for-ebseq-calculate-clustering-info $k $ARGV[0] $ARGV[1].ump";
&runCommand($command);
-$command = $dir."rsem-for-ebseq-generate-ngvector-from-clustering-info $ARGV[1].ump $ARGV[1].ngvec";
+$command = $dir."EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info $ARGV[1].ump $ARGV[1].ngvec";
&runCommand($command);
# command, {err_msg}
if ($status != 0) {
my $errmsg = "";
if (scalar(@_) > 1) { $errmsg .= $_[1]."\n"; }
- $errmsg .= "\"$_[0]\" failed! Plase check if you provide correct parameters/options for the pipeline!\n";
+ $errmsg .= "\"$_[0]\" failed! Please check if you provide correct parameters/options for the pipeline!\n";
print $errmsg;
exit(-1);
}