use File::Basename;
use strict;
+use rsem_perl_utils;
+
my $k = 25;
my $help = 0;
$command = $dir."EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info $ARGV[1].ump $ARGV[1].ngvec";
&runCommand($command);
-# command, {err_msg}
-sub runCommand {
- print $_[0]."\n";
- my $status = system($_[0]);
- if ($status != 0) {
- my $errmsg = "";
- if (scalar(@_) > 1) { $errmsg .= $_[1]."\n"; }
- $errmsg .= "\"$_[0]\" failed! Please check if you provide correct parameters/options for the pipeline!\n";
- print $errmsg;
- exit(-1);
- }
- print "\n";
-}
-
__END__
=head1 NAME