rsem v1.1.12, add a script to extract transcript-to-gene-map info from Trinity output

[rsem.git] / rsem-calculate-expression

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 94764f4bd280215ee4ad38d14f3ea4abc6497136..9b4e69ea0d47ce19ee292b9e4b6f073e6891c1b7 100755 (executable)
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -484,7 +484,7 @@ Calculate 95% credibility intervals and posterior mean estimates.  (Default: off
 
 =item B<--seed-length> <int>
 
-Seed length used by the read aligner.  Providing the correct value for this parameter is important for RSEM's accuracy if the data are single-end reads.  If RSEM runs Bowtie, it uses this value for Bowtie's seed length parameter.  (Default: 25)
+Seed length used by the read aligner.  Providing the correct value for this parameter is important for RSEM's accuracy if the data are single-end reads.  If RSEM runs Bowtie, it uses this value for Bowtie's seed length parameter. The minimum value is 25. (Default: 25)
 
 =item B<--tag> <string>