polyAChoice = atoi(argv[2]);
polyALen = 125;
- ntog = true;
quiet = false;
memset(exceptionF, 0, sizeof(exceptionF));
if (verbose) printf("%s is generated!\n", idxF);
sprintf(n2g_idxF, "%s.n2g.idx.fa", argv[3]);
- fout.open(ng2_idxF);
+ fout.open(n2g_idxF);
for (int i = 1; i <= M; i++) {
fout<< ">"<< refs.getRef(i).getName()<< endl<< aligner_refp.convert(refs.getRef(i).getSeq())<< endl;
}