-int N[3]; // note, N = N0 + N1 + N2 , but may not be equal to the total number of reads in data
-int nHits; // # of hits
-int nUnique, nMulti, nIsoMulti;
+READ_INT_TYPE N[3]; // note, N = N0 + N1 + N2 , but may not be equal to the total number of reads in data
+HIT_INT_TYPE nHits; // # of hits
+READ_INT_TYPE nUnique, nMulti, nIsoMulti;