char* aux = 0;
if (strcmp(fn_list, "")) aux = fn_list;
- parser = new SamParser(alignFType, alignF, transcripts, aux);
+ parser = new SamParser(alignFType, alignF, aux, transcripts, imdName);
memset(cat, 0, sizeof(cat));
memset(readOutFs, 0, sizeof(readOutFs));