+rsem-sam-validator : sam/bam.h sam/sam.h my_assert.h samValidator.cpp sam/libbam.a
+ $(CC) -O3 -Wall samValidator.cpp sam/libbam.a -lz -o $@
+
+rsem-scan-for-paired-end-reads : sam/bam.h sam/sam.h my_assert.h scanForPairedEndReads.cpp sam/libbam.a
+ $(CC) -O3 -Wall scanForPairedEndReads.cpp sam/libbam.a -lz -o $@
+
+rsem-for-ebseq-calculate-clustering-info : calcClusteringInfo.cpp
+ $(CC) -O3 -Wall calcClusteringInfo.cpp -o $@
+