modify one error message and add --bowtie-chunkmbs option by merging earonesty's...

[rsem.git] / extractRef.cpp

diff --git a/extractRef.cpp b/extractRef.cpp
index 3173d6517c1fccd6edcf03fa15502b64faadb28d..da0effc70e3c3fe25925c615d30e40f2c15b55eb 100644 (file)
--- a/extractRef.cpp
+++ b/extractRef.cpp
@@ -304,8 +304,7 @@ int main(int argc, char* argv[]) {
        for (int i = 1; i <= M; i++) {
                if (seqs[i] == "") {
                        const Transcript& transcript = transcripts.getTranscriptAt(i);
-                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s, whose information might not be provided! \"
-                                       "Please check if the chromosome directory is set correctly or the list of chromosome files is complete.\n", \
+                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s, whose information might not be provided! Please check if the chromosome directory is set correctly or the list of chromosome files is complete.\n", \
                                        transcript.getTranscriptID().c_str(), transcript.getGeneID().c_str());
                        exit(-1);
                }