Provided a more detailed description for how to simulate RNA-Seq data using 'rsem...

[rsem.git] / extractRef.cpp

diff --git a/extractRef.cpp b/extractRef.cpp
index 1a56cc15e8c615f02e14c7cd15f4e8c787e5a172..2d2b17cea4fde25be35e6c9ab6925ba404144a74 100644 (file)
--- a/extractRef.cpp
+++ b/extractRef.cpp
@@ -304,8 +304,8 @@ int main(int argc, char* argv[]) {
        for (int i = 1; i <= M; i++) {
                if (seqs[i] == "") {
                        const Transcript& transcript = transcripts.getTranscriptAt(i);
-                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s, whose information might not be provided! Please check if the chromosome directory is set correctly or the list of chromosome files is complete.\n", \
-                                       transcript.getTranscriptID().c_str(), transcript.getSeqName().c_str());
+                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s! Loading chromosome %s's sequence is failed. Please check if 1) the chromosome directory is set correctly; 2) the list of chromosome files is complete; 3) the FASTA files containing chromosome sequences are not truncated or having wrong format.\n", \
+                               transcript.getTranscriptID().c_str(), transcript.getSeqName().c_str(), transcript.getSeqName().c_str());
                        exit(-1);
                }
        }