Fixed a problem that will lead compilation errors for Mac OS

[rsem.git] / extractRef.cpp

diff --git a/extractRef.cpp b/extractRef.cpp
index fb7d3ecb586d36e586d8698a9f4c94bc0ec4cc46..2a26bce4a9970056f997a2015d951fa5c239be06 100644 (file)
--- a/extractRef.cpp
+++ b/extractRef.cpp
@@ -303,8 +303,9 @@ int main(int argc, char* argv[]) {
        for (int i = 1; i <= M; i++) {
                if (seqs[i] == "") {
                        const Transcript& transcript = transcripts.getTranscriptAt(i);
-                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s, whose information might not be provided! Please check if the chromosome directory is set correctly or the list of chromosome files is complete.\n", \
-                                       transcript.getTranscriptID().c_str(), transcript.getSeqName().c_str());
+
+                       fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s! Loading chromosome %s's sequence is failed. Please check if 1) the chromosome directory is set correctly; 2) the list of chromosome files is complete; 3) the FASTA files containing chromosome sequences are not truncated or having wrong format.\n", \
+                               transcript.getTranscriptID().c_str(), transcript.getSeqName().c_str(), transcript.getSeqName().c_str());
                        exit(-1);
                }
        }