Fixed a bug in perl scripts for printing error messages

[rsem.git] / calcCI.cpp

diff --git a/calcCI.cpp b/calcCI.cpp
index 89414f9b02f00ba641b8f987845aea8e977ef1b1..99ce14858825c989216dbd6ab309562218a8ae62 100644 (file)
--- a/calcCI.cpp
+++ b/calcCI.cpp
@@ -397,10 +397,13 @@ void calculate_credibility_intervals(char* imdName) {
 
 int main(int argc, char* argv[]) {
        if (argc < 8) {
-               printf("Usage: rsem-calculate-credibility-intervals reference_name sample_name sampleToken confidence nCV nSpC nMB [-p #Threads] [-q]\n");
+               printf("Usage: rsem-calculate-credibility-intervals reference_name imdName statName confidence nCV nSpC nMB [-p #Threads] [-q]\n");
                exit(-1);
        }
 
+       strcpy(imdName, argv[2]);
+       strcpy(statName, argv[3]);
+
        confidence = atof(argv[4]);
        nCV = atoi(argv[5]);
        nSpC = atoi(argv[6]);
@@ -425,8 +428,6 @@ int main(int argc, char* argv[]) {
        cvlen = M + 1;
        assert(nSamples > 0 && cvlen > 1); // for Buffter.h: (bufsize_type)nSamples
 
-       sprintf(imdName, "%s.temp/%s", argv[2], argv[3]);
-       sprintf(statName, "%s.stat/%s", argv[2], argv[3]);
        sprintf(tmpF, "%s.tmp", imdName);
        sprintf(cvsF, "%s.countvectors", imdName);