add --no-bam-output option to not generate output bam files

[rsem.git] / bam2wig.cpp

diff --git a/bam2wig.cpp b/bam2wig.cpp
index cb02bc2a9a6f575235dfe13bf9b581aca0852a12..24a53c60d48b478fc06677f61846af9c8c92f64a 100644 (file)
--- a/bam2wig.cpp
+++ b/bam2wig.cpp
@@ -1,4 +1,7 @@
 #include <cstdio>
+#include <cstdlib>
+#include <cstring>
+
 #include "wiggle.h"
 
 using namespace std;
@@ -8,8 +11,9 @@ int main(int argc, char* argv[]) {
                printf("Usage: rsem-bam2wig sorted_bam_input wig_output wiggle_name\n");
                exit(-1);
        }
-    UCSCWiggleTrackWriter track_writer(argv[2], argv[3]);
-    build_wiggles(argv[1], track_writer);
+
+       UCSCWiggleTrackWriter track_writer(argv[2], argv[3]);
+       build_wiggles(argv[1], track_writer);
 
        return 0;
 }