Added user-friendly error messages if users forget to compile the source codes

[rsem.git] / WHAT_IS_NEW

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 244066c0b5c0617031a2ecd04ae96b1a0437e90f..64dc6e55768b12dc467e1909b84a964c7dab3d9a 100644 (file)
--- a/WHAT_IS_NEW
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+RSEM v1.2.3
+
+- Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info' which may crash the script
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.2
+
+- Updated EBSeq to v1.1.5
+- Modified 'rsem-find-DE' to generate extra output files (type 'rsem-find-DE' to see more information)
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.1
+
+- Added poly(A) tails to 'reference_name.transcripts.fa' so that the RSEM generated transcript unsorted BAM file can be fed into RSEM as an input file. However, users need to rebuild their references if they want to visualize the transcript level wiggle files and BAM files using IGV
+- Modified 'rsem-tbam2gbam' to convert users' alignments from transcript BAM files into genome BAM files, provided users use 'reference_name.idx.fa' to build indices for their aligners
+- Updated EBSeq from v1.1.3 to v1.1.4
+- Corrected several typos in warning messages
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.0
+
+- Changed output formats, added FPKM field etc.
+- Fixed a bug related to paired-end reads data
+- Added a script to run EBSeq automatically and updated EBSeq to v1.1.3
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.1.21
 
 - Removed optional field "Z0:A:!" in the BAM outputs