Fixed a minor bug which only affects paired-end reads for reporting how many alignmen...

[rsem.git] / WHAT_IS_NEW

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+RSEM v1.2.6
+
+- Install the latest version of EBSeq from Bioconductor and if fails, try to install EBSeq v1.1.5 locally
+- Fixed a bug in 'rsem-gen-transcript-plots', which makes 'rsem-plot-transcript-wiggles' fail 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.5
+
+- Updated EBSeq from v1.1.5 to v1.1.6
+- Fixed a bug in 'rsem-generate-data-matrix', which can cause 'rsem-find-DE' to crash 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.4
+
+- Fixed a bug that leads to poor parallelization performance in Mac OS systems
+- Fixed a problem that may halt the 'rsem-gen-transcript-plots", thanks Han Lin for pointing out the problem and suggesting possible fixes  
+- Added some user-friendly error messages for converting transcript BAM files into genomic BAM files
+- Modified rsem-tbam2gbam so that the original alignment quality MAPQ will be preserved if the input bam is not from RSEM
+- Added user-friendly error messages if users forget to compile the source codes
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.3
 
 - Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info' which may crash the script