- Added poly(A) tails to 'reference_name.transcripts.fa' so that the RSEM generated...

[rsem.git] / WHAT_IS_NEW

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 244066c0b5c0617031a2ecd04ae96b1a0437e90f..31025d87755dbf889a055289557f69c1fae75de0 100644 (file)
--- a/WHAT_IS_NEW
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+RSEM v1.2.1
+
+- Added poly(A) tails to 'reference_name.transcripts.fa' so that the RSEM generated transcript unsorted BAM file can be fed into RSEM as an input file. However, users need to rebuild their references if they want to visualize the transcript level wiggle files and BAM files using IGV
+- Modified 'rsem-tbam2gbam' to convert users' alignments from transcript BAM files into genome BAM files, provided users use 'reference_name.idx.fa' to build indices for their aligners
+- Updated EBSeq from v1.1.3 to v1.1.4
+- Corrected several typos in warning messages
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.0
+
+- Changed output formats, added FPKM field etc.
+- Fixed a bug related to paired-end reads data
+- Added a script to run EBSeq automatically and updated EBSeq to v1.1.3
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.1.21
 
 - Removed optional field "Z0:A:!" in the BAM outputs