Added a line in WHAT_IS_NEW for renaming of quality score related options in 'rsem...

[rsem.git] / WHAT_IS_NEW

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+RSEM v1.2.7
+
+- 'rsem-find-DE' is replaced by 'rsem-run-ebseq' and 'rsem-control-fdr' for a more friendly user experience
+- Added support for differential expression testing on more than 2 conditions in RSEM's EBSeq wrappers 'rsem-run-ebseq' and 'rsem-control-fdr'
+- Renamed '--phred33-quals', '--phred64-quals', and '--solexa-quals' in 'rsem-calculate-expression' to '--bowtie-phred33-quals', '--bowtie-phred64-quals', and '--bowtie-solex-quals' to avoid confusion
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.6
 
 - Install the latest version of EBSeq from Bioconductor and if fails, try to install EBSeq v1.1.5 locally