Added a script, 'rsem-find-DE', to run EBSeq automatically

[rsem.git] / WHAT_IS_NEW

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 3c7f654e1080d7ddeb8189bbae43d0554f10413d..073de14896fce024f5f7938f73ab6806cef47757 100644 (file)
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@@ -1,7 +1,23 @@
+RSEM v1.2.0
+
+- Changed output formats, added FPKM field etc.
+- Fixed a bug related to paired-end reads data
+- Added a script to run EBSeq automatically and updated EBSeq to v1.1.3
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.1.21
+
+- Removed optional field "Z0:A:!" in the BAM outputs
+- Added --no-fractional-weight option to rsem-bam2wig, if the BAM file is not generated by RSEM, this option is recommended to be set
+- Fixed a bug for generating transcript level wiggle files using 'rsem-plot-transcript-wiggles' 
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.1.20
 
 - Added an option to set the temporary folder name
-- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert bowtie outputed SAM file into a BAM file under the temporary folder
+- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert bowtie outputted SAM file into a BAM file under the temporary folder
 - RSEM generated BAM files now contains all alignment lines produced by bowtie or user-specified aligners, including unalignable reads. Please note that for paired-end reads, if one mate has alignments but the other does not, RSEM will mark the alignable mate as "unmappable" (flag bit 0x4) and append an optional field "Z0:A:!"
 
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