while (reader.next(read)) {
if (!read.isLowQuality()) {
mld != NULL ? mld->update(read.getReadLength(), 1.0) : gld->update(read.getReadLength(), 1.0);
if (i == 0) { npro->updateC(read.getReadSeq()); }
}
else if (verbose && read.getReadLength() < seedLen) {
while (reader.next(read)) {
if (!read.isLowQuality()) {
mld != NULL ? mld->update(read.getReadLength(), 1.0) : gld->update(read.getReadLength(), 1.0);
if (i == 0) { npro->updateC(read.getReadSeq()); }
}
else if (verbose && read.getReadLength() < seedLen) {