v1.1.2

[rsem.git] / README.txt

diff --git a/README.txt b/README.txt
index 3ef2603e9273c8c163b90c47870fcc2813eb0642..0a76a6f06ab54afb865619ae30dafb464e2b1e89 100644 (file)
--- a/README.txt
+++ b/README.txt
@@ -66,7 +66,7 @@ documentation page](rsem-prepare-reference.html).
 
 ### II. Calculating Expression Values
 
-To prepare the reference sequences, you should run the
+To calculate expression values, you should run the
 'rsem-calculate-expression' program.  Run 
 
     rsem-calculate-expression --help
@@ -74,10 +74,6 @@ To prepare the reference sequences, you should run the
 to get usage information or visit the [rsem-calculate-expression
 documentation page](rsem-calculate-expression.html).
 
-Note: RSEM no longer provides nu values. Instead, RSEM provides
-nrf(normalized read fraction), which is a normalized version of theta
-vector excluding theta_0.
-
 #### Calculating expression values from single-end data
 
 For single-end models, users have the option of providing a fragment