rename plotModel.R to rsem-plot-model

[rsem.git] / README.md

diff --git a/README.md b/README.md
index 0c74b6eb387158835f7cbea1005c1273ecab7d87..b95c4ea51cffc471d5b211ab84fc07aabeeb0e64 100644 (file)
--- a/README.md
+++ b/README.md
@@ -125,11 +125,11 @@ Refer to the [UCSC custom track help page](http://genome.ucsc.edu/goldenPath/hel
 
 #### c) Visualize the model learned by RSEM
 
-RSEM provides an R script, plotModel.R, for visulazing the model learned.
+RSEM provides an R script, 'rsem-plot-model', for visulazing the model learned.
 
 Usage:
     
-    plotModel.R modelF outF
+    rsem-plot-model modelF outF
 
 modelF: the sample_name.model file generated by RSEM    
 outF: the file name for plots generated from the model. It is a pdf file    
@@ -138,7 +138,7 @@ The plots generated depends on read type and user configuration. It
 may include fragment length distribution, mate length distribution,
 read start position distribution (RSPD), quality score vs percentage
 of sequecing error given the reference base, position vs percentage of
-sequencing errro given the reference base.
+sequencing error given the reference base.
 
 ## <a name="example"></a> Example