mw = NULL;
if (isMaster) {
- ori = new Orientation(params.probF);
if (!estRSPD) rspd = new RSPD(estRSPD);
mld = new LenDist(params.mate_minL, params.mate_maxL);
}
+ ori = new Orientation(params.probF);
gld = new LenDist(params.minL, params.maxL);
if (estRSPD) rspd = new RSPD(estRSPD, params.B);
pro = new Profile(params.maxL);
pro->read(fi);
npro->read(fi);
- if (fscanf(fi, "%d", &M) == 1) {
- mw = new double[M + 1];
- for (int i = 0; i <= M; i++) fscanf(fi, "%lf", &mw[i]);
+ if (fscanf(fi, "%d", &val) == 1) {
+ if (M == 0) M = val;
+ if (M == val) {
+ mw = new double[M + 1];
+ for (int i = 0; i <= M; i++) fscanf(fi, "%lf", &mw[i]);
+ }
}
fclose(fi);
}
-//Only master node can call
+//Only master node can call. Only be called at EM.cpp
void PairedEndModel::write(const char* outF) {
FILE *fo = fopen(outF, "w");
readseq2 = pro->simulate(sampler, mateL2, m2pos, m2dir, ref);
}
- std::ostringstream stdout;
- stdout<<rid<<"_"<<dir<<"_"<<sid<<"_"<<pos<<"_"<<insertL;
- name = stdout.str();
+ strout<<rid<<"_"<<dir<<"_"<<sid<<"_"<<pos<<"_"<<insertL;
+ name = strout.str();
read = PairedEndRead(SingleRead(name + "/1", readseq1), SingleRead(name + "/2", readseq2));