changed output format to contain FPKM etc. ; fixed a bug for paired-end reads

[rsem.git] / EBSeq / man / f1.Rd

diff --git a/EBSeq/man/f1.Rd b/EBSeq/man/f1.Rd
deleted file mode 100644 (file)
index 1bf374c..0000000
--- a/EBSeq/man/f1.Rd
+++ /dev/null
@@ -1,71 +0,0 @@
-\name{f1}
-\alias{f1}
-%- Also NEED an '\alias' for EACH other topic documented here.
-\title{
-f1(Input, AlphaIn, BetaIn, EmpiricalR, NumOfGroups, log)
-}
-\description{
-f1(X_gi)=f0(X_giC1)f0(X_giC2)
-}
-\usage{
-f1(Input1, Input2, AlphaIn, BetaIn, EmpiricalRSP1, EmpiricalRSP2, NumOfGroup, log)
-}
-%- maybe also 'usage' for other objects documented here.
-\arguments{
-  \item{Input1}{
-%%     ~~Describe \code{Input1} here~~
-}
-  \item{Input2}{
-%%     ~~Describe \code{Input2} here~~
-}
-  \item{AlphaIn}{
-%%     ~~Describe \code{AlphaIn} here~~
-}
-  \item{BetaIn}{
-%%     ~~Describe \code{BetaIn} here~~
-}
-  \item{EmpiricalRSP1}{
-%%     ~~Describe \code{EmpiricalRSP1} here~~
-}
-  \item{EmpiricalRSP2}{
-%%     ~~Describe \code{EmpiricalRSP2} here~~
-}
-  \item{NumOfGroup}{
-%%     ~~Describe \code{NumOfGroup} here~~
-}
-  \item{log}{
-%%     ~~Describe \code{log} here~~
-}
-}
-\details{
-%%  ~~ If necessary, more details than the description above ~~
-}
-\value{
-%%  ~Describe the value returned
-%%  If it is a LIST, use
-%%  \item{comp1 }{Description of 'comp1'}
-%%  \item{comp2 }{Description of 'comp2'}
-%% ...
-}
-\references{
-NBBetaEB.bias.uniqueP_PoolVarSpeedUp_MDFPoi_NoNormVar, f0.bias.uniqueP_PoolVarSpeedUp_MDFPoi_NoNormVar
-}
-\author{
-Ning Leng
-}
-\note{
-%%  ~~further notes~~
-}
-
-%% ~Make other sections like Warning with \section{Warning }{....} ~
-
-\seealso{
-f0
-}
-\examples{
-
-}
-% Add one or more standard keywords, see file 'KEYWORDS' in the
-% R documentation directory.
-\keyword{ ~kwd1 }
-\keyword{ ~kwd2 }% __ONLY ONE__ keyword per line