Included EBSeq for downstream differential expression analysis

[rsem.git] / EBSeq / man / crit_fun.Rd

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+\name{crit_fun}
+\alias{crit_fun}
+%- Also NEED an '\alias' for EACH other topic documented here.
+\title{
+Calculate the adjusted FDR threshold 
+}
+\description{
+Calculate the adjusted FDR threshold using the posterior probabilities at a target FDR
+}
+\usage{
+crit_fun(PPEE, thre)
+}
+%- maybe also 'usage' for other objects documented here.
+\arguments{
+  \item{PPEE}{
+The posterior probabilities of being EE.
+}
+  \item{thre}{
+The target FDR.
+  }
+
+}
+\details{
+%%  ~~ If necessary, more details than the description above ~~
+}
+\value{
+The adjusted FDR threshold of target FDR.
+}
+\references{
+}
+\author{
+Ning Leng
+}
+
+%% ~Make other sections like Warning with \section{Warning }{....} ~
+
+\seealso{
+}
+\examples{
+##---- Should be DIRECTLY executable !! ----
+##-- ==>  Define data, use random,
+##--   or do  help(data=index)  for the standard data sets.
+
+## The function is currently defined as
+}
+% Add one or more standard keywords, see file 'KEYWORDS' in the
+% R documentation directory.
+\keyword{ FDR }