Included EBSeq for downstream differential expression analysis

[rsem.git] / EBSeq / man / PlotTopCts.Rd

diff --git a/EBSeq/man/PlotTopCts.Rd b/EBSeq/man/PlotTopCts.Rd
new file mode 100644 (file)
index 0000000..4c3d187
--- /dev/null
+++ b/EBSeq/man/PlotTopCts.Rd
@@ -0,0 +1,66 @@
+\name{PlotTopCts}
+\alias{PlotTopCts}
+%- Also NEED an '\alias' for EACH other topic documented here.
+\title{
+Plot 3 plots for simulation data
+}
+\description{
+%%  ~~ A concise (1-5 lines) description of what the function does. ~~
+}
+\usage{
+PlotTopCts(TopNum, FD, names)
+}
+%- maybe also 'usage' for other objects documented here.
+\arguments{
+  \item{TopNum}{
+%%     ~~Describe \code{TopNum} here~~
+}
+  \item{FD}{
+%%     ~~Describe \code{FD} here~~
+}
+  \item{names}{
+%%     ~~Describe \code{names} here~~
+}
+}
+\details{
+%%  ~~ If necessary, more details than the description above ~~
+}
+\value{
+%%  ~Describe the value returned
+%%  If it is a LIST, use
+%%  \item{comp1 }{Description of 'comp1'}
+%%  \item{comp2 }{Description of 'comp2'}
+%% ...
+}
+\references{
+%% ~put references to the literature/web site here ~
+}
+\author{
+%%  ~~who you are~~
+}
+\note{
+%%  ~~further notes~~
+}
+
+%% ~Make other sections like Warning with \section{Warning }{....} ~
+
+\seealso{
+%% ~~objects to See Also as \code{\link{help}}, ~~~
+}
+\examples{
+##---- Should be DIRECTLY executable !! ----
+##-- ==>  Define data, use random,
+##--   or do  help(data=index)  for the standard data sets.
+
+## The function is currently defined as
+function(TopNum, FD, names)
+{
+    matplot(c(1:TopNum) , FD,type="l",xlab="Top DE selected", lwd=2, log="y", ylab="FD")
+    legend("topleft",col=1:TopNum, lwd=2, lty=1:TopNum, names)
+
+  }
+}
+% Add one or more standard keywords, see file 'KEYWORDS' in the
+% R documentation directory.
+\keyword{ ~kwd1 }
+\keyword{ ~kwd2 }% __ONLY ONE__ keyword per line