changed output format to contain FPKM etc. ; fixed a bug for paired-end reads

[rsem.git] / EBSeq / man / PlotFDTP.Rd

diff --git a/EBSeq/man/PlotFDTP.Rd b/EBSeq/man/PlotFDTP.Rd
deleted file mode 100644 (file)
index e3fff39..0000000
--- a/EBSeq/man/PlotFDTP.Rd
+++ /dev/null
@@ -1,71 +0,0 @@
-\name{PlotFDTP}
-\alias{PlotFDTP}
-%- Also NEED an '\alias' for EACH other topic documented here.
-\title{
-Plot the FDR vs TPR for each method in simulation data
-}
-\description{
-%%  ~~ A concise (1-5 lines) description of what the function does. ~~
-}
-\usage{
-PlotFDTP(TopNum, FDR, TPR, names)
-}
-%- maybe also 'usage' for other objects documented here.
-\arguments{
-  \item{TopNum}{
-%%     ~~Describe \code{TopNum} here~~
-}
-  \item{FDR}{
-%%     ~~Describe \code{FDR} here~~
-}
-  \item{TPR}{
-%%     ~~Describe \code{TPR} here~~
-}
-  \item{names}{
-%%     ~~Describe \code{names} here~~
-}
-}
-\details{
-%%  ~~ If necessary, more details than the description above ~~
-}
-\value{
-%%  ~Describe the value returned
-%%  If it is a LIST, use
-%%  \item{comp1 }{Description of 'comp1'}
-%%  \item{comp2 }{Description of 'comp2'}
-%% ...
-}
-\references{
-%% ~put references to the literature/web site here ~
-}
-\author{
-%%  ~~who you are~~
-}
-\note{
-%%  ~~further notes~~
-}
-
-%% ~Make other sections like Warning with \section{Warning }{....} ~
-
-\seealso{
-%% ~~objects to See Also as \code{\link{help}}, ~~~
-}
-\examples{
-##---- Should be DIRECTLY executable !! ----
-##-- ==>  Define data, use random,
-##--   or do  help(data=index)  for the standard data sets.
-
-## The function is currently defined as
-function(TopNum, FDR, TPR,names)
-{
-  
-  matplot(FDR, TPR, xlim=c(0,.5), ylim=c(0,1) ,type="l",lwd=2,xlab="FDR", ylab="TPR")
-    legend("bottomright",col=1:TopNum, lwd=2, lty=1:TopNum, names)
-
-
-  }
-}
-% Add one or more standard keywords, see file 'KEYWORDS' in the
-% R documentation directory.
-\keyword{ ~kwd1 }
-\keyword{ ~kwd2 }% __ONLY ONE__ keyword per line