changed output format to contain FPKM etc. ; fixed a bug for paired-end reads

[rsem.git] / EBSeq / man / LogNMulti.Rd

diff --git a/EBSeq/man/LogNMulti.Rd b/EBSeq/man/LogNMulti.Rd
deleted file mode 100644 (file)
index 627348c..0000000
--- a/EBSeq/man/LogNMulti.Rd
+++ /dev/null
@@ -1,73 +0,0 @@
-\name{LogNMulti}
-\alias{LogNMulti}
-%- Also NEED an '\alias' for EACH other topic documented here.
-\title{
-The function to run EM (one round) using optim.
-}
-\description{
-%%  ~~ A concise (1-5 lines) description of what the function does. ~~
-}
-\usage{
-LogNMulti(Input, InputSP, EmpiricalR, EmpiricalRSP, NumOfEachGroup, AlphaIn, BetaIn, PIn, NoneZeroLength,AllParti, Conditions)
-}
-%- maybe also 'usage' for other objects documented here.
-\arguments{
-  \item{Input}{
-%%     ~~Describe \code{Input} here~~
-}
-  \item{InputSP}{
-%%     ~~Describe \code{InputSP} here~~
-}
-  \item{EmpiricalR}{
-%%     ~~Describe \code{EmpiricalR} here~~
-}
-  \item{EmpiricalRSP}{
-%%     ~~Describe \code{EmpiricalRSP} here~~
-}
-  \item{NumOfEachGroup}{
-%%     ~~Describe \code{NumOfEachGroup} here~~
-}
-  \item{AlphaIn}{
-%%     ~~Describe \code{AlphaIn} here~~
-}
-  \item{BetaIn}{
-%%     ~~Describe \code{BetaIn} here~~
-}
-  \item{PIn}{
-%%     ~~Describe \code{PIn} here~~
-}
-  \item{NoneZeroLength}{
-%%     ~~Describe \code{NoneZeroLength} here~~
-}
-}
-\details{
-%%  ~~ If necessary, more details than the description above ~~
-}
-\value{
-%%  ~Describe the value returned
-%%  If it is a LIST, use
-%%  \item{comp1 }{Description of 'comp1'}
-%%  \item{comp2 }{Description of 'comp2'}
-%% ...
-}
-\references{
-%% ~put references to the literature/web site here ~
-}
-\author{
-%%  ~~who you are~~
-}
-\note{
-%%  ~~further notes~~
-}
-
-%% ~Make other sections like Warning with \section{Warning }{....} ~
-
-\seealso{
-%% ~~objects to See Also as \code{\link{help}}, ~~~
-}
-\examples{
-}
-% Add one or more standard keywords, see file 'KEYWORDS' in the
-% R documentation directory.
-\keyword{ ~kwd1 }
-\keyword{ ~kwd2 }% __ONLY ONE__ keyword per line