Added support for DE analysis on multiple conditions via running EBSeq

[rsem.git] / EBSeq / makefile

diff --git a/EBSeq/makefile b/EBSeq/makefile
index f97c12d69c9289e261f871e1ef9621448a4f0536..bf25454731aeb30ec5d71eadead83eceb922023b 100644 (file)
--- a/EBSeq/makefile
+++ b/EBSeq/makefile
@@ -1,16 +1,13 @@
 CC = g++
-PROGRAMS = blockmodeling EBSeq rsem-for-ebseq-calculate-clustering-info
+PROGRAMS = EBSeq rsem-for-ebseq-calculate-clustering-info
 
 all : $(PROGRAMS)
 
-blockmodeling : blockmodeling_0.1.8.tar.gz
-       R CMD INSTALL -l "." blockmodeling_0.1.8.tar.gz
-
-EBSeq : blockmodeling EBSeq_1.1.3.tar.gz
-       R CMD INSTALL -l "." EBSeq_1.1.3.tar.gz
+EBSeq : 
+       ./install
 
 rsem-for-ebseq-calculate-clustering-info : calcClusteringInfo.cpp
        $(CC) -O3 -Wall calcClusteringInfo.cpp -o $@
 
 clean : 
-       rm -rf $(PROGRAMS) *~
+       rm -rf blockmodeling $(PROGRAMS) *~