changed output format to contain FPKM etc. ; fixed a bug for paired-end reads

[rsem.git] / EBSeq / makefile

diff --git a/EBSeq/makefile b/EBSeq/makefile
new file mode 100644 (file)
index 0000000..aae42c1
--- /dev/null
+++ b/EBSeq/makefile
@@ -0,0 +1,16 @@
+CC = g++
+PROGRAMS = blockmodeling EBSeq rsem-for-ebseq-calculate-clustering-info
+
+all : $(PROGRAMS)
+
+blockmodeling : blockmodeling_0.1.8.tar.gz
+       R CMD INSTALL -l "." blockmodeling_0.1.8.tar.gz
+
+EBSeq : blockmodeling EBSeq_1.1.3.tar.gz
+       R CMD INSTALL -l "." EBSeq_1.1.3.tar.gz
+
+rsem-for-ebseq-calculate-clustering-info : calcClusteringInfo.cpp
+       $(CC) -O3 -Wall calcClusteringInfo.cpp -o $@
+
+clean : 
+       rm -rf $(PROGRAMS)