rsem v1.2.0

[rsem.git] / BamWriter.h

diff --git a/BamWriter.h b/BamWriter.h
index e33a07fdc35e335aaf2cfe10d900fca0efd1eee2..fd0b8b7fb2734321026c85af0253b301279c2627 100644 (file)
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -227,7 +227,7 @@ void BamWriter::work(HitWrapper<SingleHit> wrapper, Transcripts& transcripts) {
 
                        uint16_t rstrand = b->core.flag & 0x0010; // read strand
                        b->core.flag -= rstrand;
-                       rstrand = (!rstrand && transcript.getStrand() == '+' || rstrand && transcript.getStrand() == '-' ? 0 : 0x0010);
+                       rstrand = (((!rstrand && transcript.getStrand() == '+') || (rstrand && transcript.getStrand() == '-')) ? 0 : 0x0010);
                        b->core.flag += rstrand;
 
                        push_qname(qname, b->core.l_qname, data);
@@ -356,7 +356,7 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper, Transcripts& transcripts)
                        b2->core.flag = b2->core.flag - (b2->core.flag & 0x0010) - (b2->core.flag & 0x0020);
 
                        uint16_t add, add2;
-                       if (!rstrand && transcript.getStrand() == '+' || rstrand && transcript.getStrand() == '-') {
+                       if ((!rstrand && transcript.getStrand() == '+') || (rstrand && transcript.getStrand() == '-')) {
                                add = 0x0020; add2 = 0x0010;
                        }
                        else {