rsem v1.1.21

[rsem.git] / BamWriter.h

diff --git a/BamWriter.h b/BamWriter.h
index 782f5bdeb6705748a8919265e854b54d1f418133..f664710245ff265e184f922c642c0d3efc74a29a 100644 (file)
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -144,6 +144,8 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper) {
                  b->core.mpos = b2->core.pos;
                  b2->core.mpos = b->core.pos;
                }
+
+               /*
                else {
                  // if only one mate can be aligned, mask it as unaligned and put an additional tag Z0:A:!
                  char exclamation = '!';
@@ -156,7 +158,7 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper) {
                    bam_aux_append(b2, "Z0", 'A', bam_aux_type2size('A'), (uint8_t*)&exclamation);
                  }
                }
-
+               */
 
                samwrite(out, b);
                samwrite(out, b2);