- b->core.mpos = b2->core.pos;
- b2->core.mpos = b->core.pos;
- }
-
- /*
- else {
- // if only one mate can be aligned, mask it as unaligned and put an additional tag Z0:A:!
- char exclamation = '!';
- if (!(b->core.flag & 0x0004)) {
- b->core.flag |= 0x0004;
- bam_aux_append(b, "Z0", 'A', bam_aux_type2size('A'), (uint8_t*)&exclamation);
- }
- if (!(b2->core.flag & 0x0004)) {
- b2->core.flag |= 0x0004;
- bam_aux_append(b2, "Z0", 'A', bam_aux_type2size('A'), (uint8_t*)&exclamation);
- }