Tested the codes

[rsem.git] / BamConverter.h

diff --git a/BamConverter.h b/BamConverter.h
index 13b8557f5bc727916ba31857cfdd39ac839d39d0..eaf2f66669d5858a4cd29778d7533a01f5a5690f 100644 (file)
--- a/BamConverter.h
+++ b/BamConverter.h
@@ -101,7 +101,7 @@ void BamConverter::process() {
 
 
                if (!notgood) {
-                 assert((b->core.tid == b2->core.tid) && (b->core.flag & 0x0040) && (b2->core.flag & 0x0080)); // for collapsing
+                 if (isPaired) assert((b->core.tid == b2->core.tid) && (b->core.flag & 0x0040) && (b2->core.flag & 0x0080)); // for collapsing
 
                  const Transcript& transcript = transcripts.getTranscriptViaEid(b->core.tid + 1);