rsem v1.1.15

[rsem.git] / BamConverter.h

diff --git a/BamConverter.h b/BamConverter.h
index 9b543087443aac68a72999a13e874b199d613cc4..cca0eae895fd347b243cc8f2f315be471c64498c 100644 (file)
--- a/BamConverter.h
+++ b/BamConverter.h
@@ -91,7 +91,7 @@ void BamConverter::process() {
                if (cnt % 1000000 == 0) { printf("."); fflush(stdout); }
 
                // at least one segment is not properly mapped
-               if ((b->core.flag & 0x0004) || isPaired && (b2->core.flag & 0x0004)) continue;
+               if ((b->core.flag & 0x0004) || (isPaired && (b2->core.flag & 0x0004))) continue;
 
                const Transcript& transcript = transcripts.getTranscriptAt(b->core.tid + 1);