add what I've done at bayer

diff --git a/don_armstrong_resume.org b/don_armstrong_resume.org
index 475e3fb0702f23b919fc83b9deb21c0ea3db07c4..e22a1408a8a847308f2f6c604aec1a4a090722b3 100644 (file)
--- a/don_armstrong_resume.org
+++ b/don_armstrong_resume.org
@@ -7,6 +7,33 @@
 # #+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
 
 * Experience
+** Team Lead Data Engineering at Bayer Crop Science \hfill 2018--Present
++ Hired, managed, and developed team of 5+ Data Engineers, Systems
+  Administrators, and Business Analysts working within the Biologics
+  R&D unit of Bayer Crop Science enabling data capture, data
+  integration, and operationalization of data analysis pipelines
++ Developed and supervised implementation of data capture,
+  integration, and analysis strategies to increase the value of
+  genomics, metabolomics, transcriptomics, spectroscopic, phenotypic
+  (/in vitro/ and /in planta/), and fermentation/formulation process
+  data for discovery and development
++ Lead the development of multiple tools in python and R while
+  coaching, mentoring, and developing multiple developers and
+  engineers
++ Served as a key collaborator on multiple cross-function and
+  cross-divisional projects, including leading the architecture of a
+  life science collaboration using serverless architecture to provide
+  machine-learning estimates of critical parameters from
+  spectrographic measurements
+** Debian Developer \hfill 2004--Present
++ Maintained, managed configurations, and resolved issues in multiple
+  packages written in R, perl, python, scheme, C++, and C.
++ Resolved technical conflicts, developed technical standards, and
+  provided leadership as the elected chair of the Technical Committee.
++ Developer of [[https://bugs.debian.org][Debbugs]], a perl and SQL-based issue-tracker with ≥ 100
+  million entries with web, REST, and SOAP interfaces.
++ Provided vendor-level support for complex systems integration issues
+  on Debian GNU/Linux systems.
 ** Research Scientist at UIUC \hfill 2015--2017
 + Primarily responsible for the planning, design, organization,
   execution, and analysis of multiple complex epidemiological studies
@@ -22,7 +49,7 @@
   maintain abreast of current scientific literature, principles of
   scientific research, and modern statistical methodology.
 + Wrote software and designed relational databases using R, perl, C,
-  SQL, make, and very large computational systems.
+  SQL, make, and very large computational systems ([[https://bluewaters.ncsa.illinois.edu/][Blue Waters]])
 ** Postdoctoral Researcher at USC \hfill 2013--2015
 + Primarily responsible for the design, execution, and analysis of an
   epidemiological study to identify genomic variants associated with
@@ -42,20 +69,11 @@
   the Los Angeles and greater United States.
 + Wrote and maintained multiple software components to reproducibly
   perform the analyses.
-** Debian Developer \hfill 2004--Present
-+ Maintained, managed configurations, and resolved issues in multiple
-  packages written in R, perl, python, scheme, C++, and C.
-+ Resolved technical conflicts, developed technical standards, and
-  provided leadership as the elected chair of the Technical Committee.
-+ Developer of [[https://bugs.debian.org][Debbugs]], a perl and SQL-based issue-tracker with ≥ 100
-  million entries with web, REST, and SOAP interfaces.
-** Independent Systems Administrator \hfill 2004--Present
+** Independent Systems Administrator \hfill 2004--2018
 + Researched, recommended, budgeted, designed, deployed, configured,
   operated, and monitored highly-available high-performance enterprise
   hardware and software for web applications, authentication, backup,
   email, and databases.
-+ Provided vendor-level support for complex systems integration issues
-  on Debian GNU/Linux systems.
 + Full life-cycle support of medium and small business networking
   infrastructure, including VPN, network security, wireless networks,
   routing, DNS, DHCP, and authentication.
@@ -64,6 +82,53 @@
 ** Batchelor of Science (BS) in Biology \hfill UC Riverside
 
 * Skills
+** Leadership and Mentoring
++ Lead
++ Mentored graduate students and Outreachy and Google Summer of Code
+  interns
++ Former chair of Debian's Technical Committee
++ Head developer behind https://bugs.debian.org
+** Software Development
++ Languages: python, R, perl, C, C++, python, groovy, sh (bash, POSIX,
+  and zsh), make
++ Collaborative Development: git, Jira, github actions, Aha!, travis,
+  continuous integration, automated testing, continuous deployment
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
+** Big Data
++ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
++ Inter-process communication: MPI, OpenMP
++ Filestorage: Gluster, CEFS, GPFS, Lustre
++ Linux system administration
+** Applications and Daemons
++ Web: apache, ngix, varnish (load balancing/caching), REST, SOAP,
+  Tomcat
++ SQL servers: PostgreSQL, MySQL, SQLite, oracle
++ Build Tools: GNU make, cmake
++ Continuous Integration/Deployment: codebuild, travis, jenkins,
+  github actions
++ Virtualization: libvirt, KVM, qemu, VMware, docker
++ Statistics: R, SAS
++ VCS: git, mercurial, subversion
++ Mail: postfix, exim, sendmail, spamassassin
++ Configuration Infrastructure: puppet, hiera, etckeeper, git
++ Documentation: \LaTeX, confluence, emacs, MarkDown, MediaWiki, ikiwiki, trac
++ Monitoring: munin, nagios, icinga, prometheus
++ Issue Tracking: Debbugs, Request Tracker, Trac, JIRA
++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
+  Powerpoint
+** Networking
+   + Hardware, Linux routing and firewall experience, ferm, DHCP,
+     openvpn, bonding, NAT, DNHS, SNMP, IPv4, and IPv6.
+** Operating systems
+   + GNU/Linux (Debian, Ubuntu, Red Hat)
+   + Windows
+   + MacOS
+** Communication
++ Strong written communication skills as evidenced by publication
+  record
++ Strong verbal and presentation skills as evidenced by presentation
+  and teaching record
 ** Genomics and Epigenomics
 + NGS and array-based Genomics and Epigenomics of complex human
   diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
@@ -83,49 +148,21 @@
   learning in very large (> 1TB) datasets) using R and SAS.
 + Addressing confounders and batch effects
 + Reproducible research
-** Big Data
-+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
-+ Inter-process communication: MPI, OpenMP
-+ Filestorage: Gluster, CEFS, GPFS, Lustre
-+ Linux system administration
-** Mentoring and Leadership
-+ Mentored graduate students and Outreachy and Google Summer of Code
-  interns
-+ Former chair of Debian's Technical Committee
-+ Head developer behind https://bugs.debian.org
-** Software Development
-+ Languages: perl, R, C, C++, python, groovy, sh, make
-+ Collaborative Development: git, travis, continuous integration,
-  automated testing
-+ Web, Mobile: Shiny, jQuery, JavaScript
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
-+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
-  Powerpoint
-** Communication
-+ Strong written communication skills as evidenced by publication
-  record
-+ Strong verbal and presentation skills as evidenced by presentation
-  and teaching record
-# ** Consortia Involvement
-# + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
-# + *Psychiatric Genomics Consortium*: Identification of epigenetic
-#   variants which are correlated with PTSD.
-# + *SLEGEN*: System lupus erythematosus genetics consortium.
-* Authored Software
+* Authored Open Source Software
 + *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
    distribution. [[https://bugs.debian.org]]
 + *[[http://git.donarmstrong.com/r/CairoHacks.git][CairoHacks]]*: Bookmarks and Raster images for large PDF plots in R.
 + *[[http://rzlab.ucr.edu/function2gene/][Function2Gene]]*: Gene selection tool based on literature mining which
    enables Bayesian approaches to significance testing.
 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
-   protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
+   protein projections.
 * Publications and Presentations
-+ 24 peer-reviewed publications cited over 1800 times:
++ 24 peer-reviewed publications cited over 3000 times:
   https://dla2.us/pubs
 + Publication record in GWAS, expression analysis of microarrays, SLE,
   GBM, epigenetics, comparative evolution of mammals, and lipid
   membranes
-+ H index of 11
++ H index >= 20
 + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
   Source: https://dla2.us/pres