update resume

[resume.git] / dla-resume.org

diff --git a/dla-resume.org b/dla-resume.org
index d7091e357404d8b09924117750f622160c9ba983..346e7cc84b5798f57d02689fd08361f3d0ae612b 100644 (file)
--- a/dla-resume.org
+++ b/dla-resume.org
@@ -13,7 +13,9 @@
   {\footnotesize
   \href{mailto:\myemail}{\myemail} \hfill
   +1~714-813-8531 \\
-  {\centering  \href{\myweb}{\myweb} }
+  {\centering  \href{\myweb}{\myweb} 
+  \href{https://github.com/dondelelcaro}{https://github.com/dondelelcaro}
+  }
   }
   \vfill
   \end{minipage}
@@ -37,36 +39,40 @@
 + *BS* in Biology
 * Skills
 ** Genomics and Epigenomics
-+ Genomics and Epigenomics of complex human diseases including
-  PTSD, Systemic Lupus Erythematosus, and Alzheimer's Disease using
-  cross-sectional and longitudinal experimental designs
++ *NGS* and array-based Genomics and Epigenomics of complex human
+  diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
+  bead arrays, and Affymetrix microarrays from sample collection to
+  publication.
++ Reproducible, scalable bioinformatics analysis using make,
+  *nextflow*, and *cwl* based workflows on cloud- and cluster-based
+  systems on terabyte-scale datasets
++ Alignment, annotation, and variant calling using existing and custom
+  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
 + Correcting for and experimental design to overcome multiple
   testing, confounders, and batch effects using Bayesian and
   frequentist methods approaches
-+ Reproducible, scalable analysis using workflows on cloud- and
-  cluster-based systems on terabyte-scale datasets
-+ Using evolutionary genomics to identify causal human variants
+# + Using evolutionary genomics to identify causal human variants
 ** Statistics
-+ Statistical modeling (regression, inference, Bayesian and
-  frequentist approaches in very large (> 1TB) datasets)
++ Statistical modeling (regression, inference, prediction, and
+  learning in very large (> 1TB) datasets)
 + Addressing confounders and batch effects
-+ Reproducible research
+# + Reproducible research
 ** Big Data
-+ Parallel and Cloud Computing
-+ Inter-process communication: MPI, OpenMP, Hadoop
++ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
++ Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
-+ Cloud based-infrastructure: Azure, AWS, Docker, cloud-init
-+ Debian GNU/Linux system administration
++ Linux system administration
 ** Mentoring and Leadership
 + Mentored graduate students and Outreachy and Google Summer of Code
   interns
-+ Chairperson of the Debian Technical Committee
++ Former chair of Debian's Technical Committee
 + Head developer behind https://bugs.debian.org
 ** Software Development
-+ Languages: perl, R, C, C++, python, groovy, assembly, sh, make
++ Languages: perl, R, C, C++, python, groovy, sh, make
 + Collaborative Development: git, travis, continuous integration,
   automated testing
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 + Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
   Powerpoint
 ** Communication
@@ -108,7 +114,7 @@
   studies.
 ** Debian Developer
 + 2004--Present. \emph{Debian Project}, Developer; Technical Committee
-  Member (2010--Present), Technical Committee Chair (2015--2016).
+  Member (2010--2016), Technical Committee Chair (2015--2016).
 * Authored Software
 + *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
    distribution. [[https://bugs.debian.org]]
@@ -118,10 +124,11 @@
 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
    protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
 * Publications and Presentations
-+ 20 peer-reviewed refereed publications cited over 1700 times:
++ 21 peer-reviewed publications cited over 1800 times:
   https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays,
-  epigenetics, comparative evolution of mammals, and lipid membranes
++ Publication record in GWAS, expression analysis of microarrays, SLE,
+  GBM, epigenetics, comparative evolution of mammals, and lipid
+  membranes
 + H index of 11
 + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
   Source: https://dla2.us/pres