update resume

[resume.git] / dla-resume.org

diff --git a/dla-resume.org b/dla-resume.org
index 3c57f18f64adefdeb2cfe353f0a965fa55969170..346e7cc84b5798f57d02689fd08361f3d0ae612b 100644 (file)
--- a/dla-resume.org
+++ b/dla-resume.org
@@ -46,21 +46,20 @@
 + Reproducible, scalable bioinformatics analysis using make,
   *nextflow*, and *cwl* based workflows on cloud- and cluster-based
   systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and
-  custom-written software, including *GATK*, *bwa*, *STAR*, and
-  *kallisto*.
++ Alignment, annotation, and variant calling using existing and custom
+  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
 + Correcting for and experimental design to overcome multiple
   testing, confounders, and batch effects using Bayesian and
   frequentist methods approaches
 # + Using evolutionary genomics to identify causal human variants
 ** Statistics
-+ Statistical modeling (regression, inference, Bayesian and
-  frequentist approaches in very large (> 1TB) datasets)
++ Statistical modeling (regression, inference, prediction, and
+  learning in very large (> 1TB) datasets)
 + Addressing confounders and batch effects
 # + Reproducible research
 ** Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
-+ Inter-process communication: MPI, OpenMP, Hadoop
++ Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
 + Linux system administration
 ** Mentoring and Leadership
@@ -69,10 +68,11 @@
 + Former chair of Debian's Technical Committee
 + Head developer behind https://bugs.debian.org
 ** Software Development
-+ Languages: perl, R, C, C++, python, groovy, assembly, sh, make
++ Languages: perl, R, C, C++, python, groovy, sh, make
 + Collaborative Development: git, travis, continuous integration,
   automated testing
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 + Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
   Powerpoint
 ** Communication
@@ -124,10 +124,11 @@
 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
    protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
 * Publications and Presentations
-+ 20 peer-reviewed refereed publications cited over 1700 times:
++ 21 peer-reviewed publications cited over 1800 times:
   https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays,
-  epigenetics, comparative evolution of mammals, and lipid membranes
++ Publication record in GWAS, expression analysis of microarrays, SLE,
+  GBM, epigenetics, comparative evolution of mammals, and lipid
+  membranes
 + H index of 11
 + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
   Source: https://dla2.us/pres