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-#+OPTIONS: ^:nil
-#+OPTIONS: toc:nil
-#+TITLE: Resume
-#+AUTHOR: Don L. Armstrong
-#+LATEX_CMD: xelatex
-#+LATEX_CLASS: dlaresume
-# #+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
-
-* Experience
-** Research Scientist at UIUC \hfill 2015--2017
-+ Epigenetic modifications associated with PTSD, the genomic basis of
-  the development of parturition in mammals, and detecting adverse
-  pregnancy outcomes using urinary exosomes.
-** Postdoctoral Researcher at USC \hfill 2013--2015
-+ Identifying genes and causal alleles associated with Systemic Lupus
-  Erythematosus using genome-wide association, next-generation
-  sequencing, computational and biochemical approaches.
-** Postdoctoral Researcher at UCR \hfill 2010--2012
-+ Identifying genes which are associated with Systemic Lupus
-  Erythematosus using prior information and targeted trio-based
-  studies.
-** Debian Developer \hfill 2004--Present
-+ \emph{Debian Project}, Developer; Technical Committee Member
-  (2010--2016), Technical Committee Chair (2015--2016).
-
-* Education
-** Doctor of Philosophy (PhD) \hfill UC Riverside
- + Cell, Molecular and Developmental Biology.
-** Batchelor of Science (BS) in Biology \hfill UC Riverside
-
-* Skills
-** Genomics and Epigenomics
-+ *NGS* and array-based Genomics and Epigenomics of complex human
-  diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
-  bead arrays, and Affymetrix microarrays from sample collection to
-  publication.
-+ Reproducible, scalable bioinformatics analysis using make,
-  *nextflow*, and *cwl* based workflows on cloud- and cluster-based
-  systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and custom
-  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
-+ Correcting for and experimental design to overcome multiple
-  testing, confounders, and batch effects using Bayesian and
-  frequentist methods approaches
-# + Using evolutionary genomics to identify causal human variants
-** Statistics
-+ Statistical modeling (regression, inference, prediction, and
-  learning in very large (> 1TB) datasets)
-+ Addressing confounders and batch effects
-# + Reproducible research
-** Big Data
-+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
-+ Inter-process communication: MPI, OpenMP
-+ Filestorage: Gluster, CEFS, GPFS, Lustre
-+ Linux system administration
-** Mentoring and Leadership
-+ Mentored graduate students and Outreachy and Google Summer of Code
-  interns
-+ Former chair of Debian's Technical Committee
-+ Head developer behind https://bugs.debian.org
-** Software Development
-+ Languages: perl, R, C, C++, python, groovy, sh, make
-+ Collaborative Development: git, travis, continuous integration,
-  automated testing
-+ Web, Mobile: Shiny, jQuery, JavaScript
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
-+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
-  Powerpoint
-** Communication
-+ Strong written communication skills as evidenced by publication
-  record
-+ Strong verbal and presentation skills as evidenced by presentation
-  and teaching record
-# ** Consortia Involvement
-# + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
-# + *Psychiatric Genomics Consortium*: Identification of epigenetic
-#   variants which are correlated with PTSD.
-# + *SLEGEN*: System lupus erythematosus genetics consortium.
-* Authored Software
-+ *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
-   distribution. [[https://bugs.debian.org]]
-+ *[[http://git.donarmstrong.com/r/CairoHacks.git][CairoHacks]]*: Bookmarks and Raster images for large PDF plots in R.
-+ *[[http://rzlab.ucr.edu/function2gene/][Function2Gene]]*: Gene selection tool based on literature mining which
-   enables Bayesian approaches to significance testing.
-+ *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
-   protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
-* Publications and Presentations
-+ 24 peer-reviewed publications cited over 1800 times:
-  https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays, SLE,
-  GBM, epigenetics, comparative evolution of mammals, and lipid
-  membranes
-+ H index of 11
-+ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
-  Source: https://dla2.us/pres
-
-* Funding and Awards
-** Grants
-+ 2017 R Consortium: *[[https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants][Adding Linux Binary Builders to R-Hub]]* Role:
-  Co-PI
-+ 2015 Blue Waters Allocation Grant: *Making ancestral trees using Bayesian
-  inference to identify disease-causing genetic variants* Role:
-  Primary Investigator
-+ *Tracking placenta and uterine funciton using urinary extracellular vesicles* (R21
-  RFA-HD-16-037) Role: Key Personnel
-+ *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
-  Role: Key Personnel
-** Scholarships and Fellowships
-+ 2001--2003: University of California, Riverside Doctoral Fellowship
-+ 1997--2001: Regents of the University of California Scholarship.
-
-
-