4 #+AUTHOR: Don Armstrong
6 #+LATEX_CLASS: dlaresume
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36 + *PhD* in Cell, Molecular and Developmental Biology
39 ** Genomics and Epigenomics
40 + Genomics and Epigenomics of complex human diseases including
41 PTSD, Systemic Lupus Erythematosus, and Alzheimer's Disease using
42 cross-sectional and longitudinal experimental designs
43 + Correcting for and experimental design to overcome multiple
44 testing, confounders, and batch effects using Bayesian and
45 frequentist methods approaches
46 + Reproducible, scalable analysis using workflows on cloud- and
47 cluster-based systems on terabyte-scale datasets
48 + Using evolutionary genomics to identify causal human variants
50 + Statistical modeling
51 + Addressing confounders and batch effects
52 + Reproducible research
54 + Parallel and Cloud Computing
55 + Inter-process communication: MPI, OpenMP, Hadoop
56 + Filestorage: Gluster, CEFS, GPFS, Lustre
57 + Cloud based-infrastructure: Azure, AWS, Docker, cloud-init
58 + Debian GNU/Linux system administration
59 ** Mentoring and Leadership
60 + Mentored graduate students and Outreachy and Google Summer of Code
62 + Chairperson of the Debian Technical Committee
63 + Head developer behind https://bugs.debian.org
64 ** Software Development
65 + Languages: perl, R, C, C++, python, groovy, assembly, sh, make
66 + Collaborative Development: git, travis, continuous integration,
68 + Databases: Postgresql (PL/SQL), SQLite, Mysql
70 + Strong written communication skills as evidenced by publication
72 + Strong verbal and presentation skills as evidenced by presentation
74 # ** Consortia Involvement
75 # + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
76 # + *Psychiatric Genomics Consortium*: Identification of epigenetic
77 # variants which are correlated with PTSD.
78 # + *SLEGEN*: System lupus erythematosus genetics consortium.
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92 ** Research Scientist at UIUC
93 + 2015--Present. University of Illinois at Urbana-Champaign. Epigenetic
94 modifications associated with PTSD, the genomic basis of the
95 development of parturition in mammals, and detecting adverse
96 pregnancy outcomes using urinary exosomes.
97 ** Postdoctoral Researcher at USC
98 + 2013--2015. Identifying genes and causal alleles associated with
99 Systemic Lupus Erythematosus using genome-wide association,
100 next-generation sequencing, computational and biochemical
102 ** Postdoctoral Researcher at UCR
103 + 2010--2012. Identifying genes which are associated with Systemic
104 Lupus Erythematosus using prior information and targeted trio-based
107 + 2004--Present. \emph{Debian Project}, Developer; Technical Committee
108 Member (2010--Present), Technical Committee Chair (2015--2016).
110 + *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
111 distribution. [[https://bugs.debian.org]]
112 + *[[http://git.donarmstrong.com/r/CairoHacks.git][CairoHacks]]*: Bookmarks and Raster images for large PDF plots in R.
113 + *[[http://rzlab.ucr.edu/function2gene/][Function2Gene]]*: Gene selection tool based on literature mining which
114 enables Bayesian approaches to significance testing.
115 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
116 protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
117 * Publications and Presentations
118 + 20 peer-reviewed refereed publications cited over 1700 times:
120 + Publication record in GWAS, expression analysis of microarrays,
121 epigenetics, comparative evolution of mammals, and lipid membranes
123 + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
124 Source: https://dla2.us/pres
128 + 2017 R Consortium: *[[https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants][Adding Linux Binary Builders to R-Hub]]* Role:
130 + 2015 Blue Waters Allocation Grant: *Making ancestral trees using Bayesian
131 inference to identify disease-causing genetic variants* Role:
133 + *Tracking placenta and uterine funciton using urinary extracellular vesicles* (R21
134 RFA-HD-16-037) Role: Key Personnel
135 + *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
137 ** Scholarships and Fellowships
138 + 2001--2003: University of California, Riverside Doctoral Fellowship
139 + 1997--2001: Regents of the University of California Scholarship.