]> git.donarmstrong.com Git - ool/lipid_simulation_formalism.git/commitdiff
describe environment size calculations
authorDon Armstrong <don@donarmstrong.com>
Fri, 3 Feb 2017 01:10:51 +0000 (17:10 -0800)
committerDon Armstrong <don@donarmstrong.com>
Fri, 3 Feb 2017 01:10:51 +0000 (17:10 -0800)
kinetic_formalism_competition.Rnw

index 54e7fa8c02f5a022c0ffb1447bf0495cf14970f1..79900c83bf128a12dc6dab04ba36a7f6213b0171 100644 (file)
@@ -1406,6 +1406,12 @@ $10^{-10}\mathrm{M}$. The base concentration ($10^{-10}\mathrm{M}$)
 can also be altered at the initialization of the experiment to
 specific values for specific lipid types or components.
 
 can also be altered at the initialization of the experiment to
 specific values for specific lipid types or components.
 
+The environment is a volume which is the maximum number of vesicles
+from a single simulation (4096) times the maximum size of the vesicle
+(usually 10000) divided by Avagadro's number divided by the total
+environmental lipid concentration, or usually
+\Sexpr{4096*10000/6.022E23/141E-10}~L.
+
 \subsection{Initial Vesicle Creation}
 
 Initial vesicles are seeded by selecting lipid molecules from the
 \subsection{Initial Vesicle Creation}
 
 Initial vesicles are seeded by selecting lipid molecules from the