apt_file=/etc/apt/sources.list.d/local.list
# clean up from a previous test
-dpkg --purge neurodebian-repository neurodebian-keyring || :
-echo PURGE | debconf-communicate neurodebian-repository || :
+dpkg --purge neurodebian neurodebian-keyring || :
+echo PURGE | debconf-communicate neurodebian || :
rm -rf /tmp/apt $apt_file;
mkdir -p /tmp/apt; cd /tmp/apt;
rm -f neurodebian-*deb; apt-get update -y; apt-get install -y wget;
-wget http://www.onerussian.com/tmp/neurodebian-repository_0.33~a1_all.deb;
+wget http://www.onerussian.com/tmp/neurodebian_0.33~a1_all.deb;
wget http://www.onerussian.com/tmp/neurodebian-keyring_0.33~a1_all.deb;
# generate APT repo
# Add it to the list of available
echo "deb file:///tmp/apt ./" >| $apt_file; apt-get update
# Install the beast
-apt-get install -y --allow-unauthenticated neurodebian-repository
+apt-get install -y --allow-unauthenticated neurodebian
# Verify that it has correct entries
release=$(grep -v '^[\s#]*$' /etc/apt/sources.list | head -1 | awk '{print $3;}')
grep -E '^deb\s+http.* data main\s*$' /etc/apt/sources.list.d/neurodebian.sources.list
# May be even retrospect stored debconf configuration
apt-get install debconf-utils
-debconf-get-selections | grep neurodebian-repository/release.*select.*auto
+debconf-get-selections | grep neurodebian/release.*select.*auto
# And apt-get must be working
apt-get update
# Make sure it is active
* New "upstream" release
* New features:
- - neurodebian and neurodebian-repository packages to provide 1-click
+ - neurodebian and neurodebian packages to provide 1-click
NeuroDebian deployment on Debian/Ubuntu boxesw
-- Yaroslav Halchenko <debian@onerussian.com> Mon, 28 Jul 2014 20:03:12 -0400
Package: neurodebian
Architecture: all
-Depends: ${misc:Depends}, neurodebian-repository
-Recommends: neurodebian-desktop, neurodebian-popularity-contest
+Pre-depends: python-minimal, wget
+Depends: neurodebian-keyring, ${misc:Depends}
+Recommends: netselect
+Suggests: neurodebian-desktop, neurodebian-popularity-contest
Description: turnkey platform for the neuroscience
The NeuroDebian project integrates and maintain a variety of
neuroscience-oriented (such as AFNI, FSL, PsychoPy, etc.) and many
generic computational (such as condor, pandas, etc.) software projects
within Debian.
.
- This meta-package depends on packages needed for a typical
- NeuroDebian deployment, e.g. enabling the complementary NeuroDebian
- repository of package backports and perspective packages not yet
- available from stock Debian/Ubuntu.
-
-
-Package: neurodebian-repository
-Architecture: all
-Pre-depends: python-minimal, wget
-Depends: neurodebian-keyring, ${misc:Depends}
-Recommends: netselect
-Description: NeuroDebian APT repository installer
- Besides making (neuro)scientific software available on stock Debian
- systems, neuro.debian.net (and mirrors around the globe) provides
- a repository with backport builds of the NeuroDebian-maintained
- packages for all supported Debian and Ubuntu releases.
- .
This package enables NeuroDebian repository on top of the stock
Debian or Ubuntu system.
+++ /dev/null
-#!/bin/bash
-set -e
-
-. /usr/share/debconf/confmodule
-
-db_capb backup # allow to go back, for that we implement that STATE loop
-
-debug()
-{
- [ "${DEBCONF_DEBUG:-}" != "developer" ] || echo -e "D: $*" >&2
-}
-
-db_settitle neurodebian-repository/title
-
-if [ "$1" = "configure" ]; then
- # Must have been called in preinst state, so no nd-configurerepo
- # tool is yet installed, thus delay asking questions to
- # whenever will be called in postinst state
- which nd-configurerepo 1>/dev/null 2>&1 || exit 0
-fi
-
-# Create temporary directory which will be reused
-export ND_AE_TEMPDIR=$(mktemp -d)
-trap "rm -rf \"$ND_AE_TEMPDIR\"" TERM INT EXIT
-
-neurodebian_releases="auto"
-
-# This implements a simple state machine so the back button can be handled.
-# taken from debconf demo example
-STATE=1
-while [ "$STATE" != 0 -a "$STATE" != 8 ]; do
- case $STATE in
- 1)
- export neurodebian_releases="$(ND_IFS=', ' nd-configurerepo --print-releases)"
- debug "releases: $neurodebian_releases"
- db_subst neurodebian-repository/release releases "$neurodebian_releases"
- db_input medium neurodebian-repository/release || true
- ;;
- 2)
- export neurodebian_mirrors="$(ND_IFS=', ' nd-configurerepo --print-mirrors)"
- debug "mirrors: $neurodebian_mirrors"
- db_subst neurodebian-repository/mirror mirrors "$neurodebian_mirrors"
- db_input medium neurodebian-repository/mirror || true
- mirror_selection_ret="$RET"
- debug "mirror select return: <$mirror_selection_ret>"
- ;;
- 3) db_input medium neurodebian-repository/flavor || true ;;
- 4) db_input medium neurodebian-repository/components || true ;;
- 5) db_input low neurodebian-repository/overwrite || true ;;
- 6) db_input low neurodebian-repository/suffix || true ;;
- 7) db_input medium neurodebian-repository/run-update-note || true ;;
- esac
-
- if db_go; then
-# Ubuntus managed to remove netselect "to accompany apt-netselect"
-# https://bugs.launchpad.net/ubuntu/+source/netselect/+bug/337377
-# So for now remove this mandatory demanding of netselect for "best", and
-# rely on logic in nd-configurerepo to select default mirror (currently origin)
-# as the 'best'
-#
-# case $STATE in
-# 2)
-# db_metaget neurodebian-repository/mirror value
-# selected_mirror="$RET"
-# # TODOs:
-# # - handle custom
-# # - separate out alias from url
-# debug "selected mirror: $selected_mirror"
-# if [ "$selected_mirror" = "best" ] && ! which netselect &>/dev/null; then
-# if [ "$mirror_selection_ret" = "30 question skipped" ]; then
-# # if the question was not even shown, we would
-# # not get a chance to specify mirror, thus
-# # better just fail altogether and demand intervention
-# db_input high neurodebian-repository/netselect-cannot-be-used
-# exit 1
-# else
-# db_input high neurodebian-repository/netselect-not-found
-# continue;
-# fi
-# fi
-# esac
- STATE=$(($STATE + 1))
- else
- STATE=$(($STATE - 1))
- fi
-done
-
-db_stop
-
+++ /dev/null
-tools/nd-configurerepo usr/bin
+++ /dev/null
-#!/bin/bash
-
-set -e
-
-. /usr/share/debconf/confmodule
-
-
-case "$1" in
- configure)
- # obtain all the options and call nd-configurerepo
- opts="--do-not-update"
- db_get neurodebian-repository/release; [ "$RET" = "auto" ] || opts+=" -r '$RET'"
- db_get neurodebian-repository/mirror; nd_mirror="${RET##* }" # get just a url if it came together with alias
- db_get neurodebian-repository/flavor; nd_flavor="$RET"
- db_get neurodebian-repository/components; nd_components="${RET// /}"
-
- db_get neurodebian-repository/overwrite; [ "$RET" = "true" ] && opts+=" --overwrite" || :
- db_get neurodebian-repository/suffix; [ "$RET" = "" ] || opts+=" --suffix='$RET'" || :
-
- eval nd-configurerepo -m "$nd_mirror" -c "$nd_components" $opts
- ;;
- abort-upgrade|abort-remove|abort-deconfigure)
- # nothing to do
- ;;
-
- *)
- echo "postinst called with unknown argument \`$1'" >&2
- exit 1
- ;;
-esac
-
-#DEBHELPER#
+++ /dev/null
-#!/bin/bash
-
-set -e
-
-case "$1" in
- purge)
- rm -f /etc/apt/sources.list.d/neurodebian.sources*.list
- ;;
-
- remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
- ;;
-
- *)
- echo "postrm called with unknown argument \`$1'" >&2
- exit 1
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
+++ /dev/null
-Template: neurodebian-repository/title
-Type: title
-Description: NeuroDebian APT repository installer
-
-
-Template: neurodebian-repository/release
-Type: select
-Choices: auto, ${releases}
-Default: auto
-Description: Release name of the base system
- Specify for which Debian or Ubuntu release (e.g. wheezy or trusty).
- .
- If 'auto', Debian or Ubuntu release name will be deduced from
- apt-cache policy.
-
-
-Template: neurodebian-repository/mirror
-Type: select
-Choices: origin, best, custom, ${mirrors}
-Default: best
-Description: NeuroDebian mirror to use:
- NeuroDebian project has a number of community-maintainer mirrors
- around the globe.
- .
- If you do not know which mirror URL to choose, select among
- .
- - origin: original NeuroDebian repository
- - best: will try to use netselect to select "closest" mirror.
- Depending on the configuration of the firewall, and actual mirror
- setup, might fail to select actually closest one. If netselect
- is not available, default mirror (possibly 'origin') will be used.
-
-
-Template: neurodebian-repository/flavor
-Type: select
-Choices: auto, libre, full
-Default: auto
-Description: NeuroDebian flavor to use:
- NeuroDebian project adheres to Debian Free Software Guidelines and
- has three areas of the archive in all suites/releases:
- .
- libre
- only the DFSG-compliant materials
- full
- all three areas (main, contrib, non-free)
- auto
- determine which flavor to choose based on current output of
- apt-cache policy ('full' -- if non-free (Debian) or multiverse
- (Ubuntu) areas are enabled)
-
-Template: neurodebian-repository/components
-Type: multiselect
-Choices: software, data, devel
-Default: software, data
-Description: Select NeuroDebian repository components to enable
- NeuroDebian repository provides
- .
- software
- Packages containing software packages, often backports of stable
- software releases for previous Debian/Ubuntu releases
- devel
- Additional "bleeding edge" software packages, which might not be a
- good fit for being enabled by default. (Similar to Debian
- experimental)
- data
- Packages containing data (e.g. atlases, sample datasets), often
- required by software packages. Should generally be enabled.
-
-
-Template: neurodebian-repository/overwrite
-Type: boolean
-Default: true
-Description: Should existing NeuroDebian APT file be overridden?
- If not allowed, configuration would fail if there is
- an existing apt configuration file for the NeuroDebian.
-
-Template: neurodebian-repository/suffix
-Type: string
-Default:
-Description: Additional suffix to use in the NeuroDebian APT file name
- For instance if you would like to enable additional repository
- (e.g. NeuroDebian devel) or release, without interfering with the
- main/default configuration file.
-
-Template: neurodebian-repository/run-update-note
-Type: note
-Description: Upon completion of installation invoke update in your APT frontend.
- For the installed NeuroDebian APT configuration to take an effect,
- list of packages needs to be updated. This needs to be done
- "manually" (e.g. apt-get update) upon completion of installation of
- the neurodebian-repository package.
-
-Template: neurodebian-repository/netselect-not-found
-Type: error
-Description: netselect tool was not found
- Please install netselect tool first (apt-get install netselect) or
- choose a specific mirror.
-
-Template: neurodebian-repository/netselect-cannot-be-used
-Type: error
-Description: netselect tool was not found (no other mirror)
- Please install netselect tool first (apt-get install netselect)
- before installing/configuring this package, or run with a lower
- DEBIAN_PRIORITY to choose a specific mirror.
-
--- /dev/null
+#!/bin/bash
+set -e
+
+. /usr/share/debconf/confmodule
+
+db_capb backup # allow to go back, for that we implement that STATE loop
+
+debug()
+{
+ [ "${DEBCONF_DEBUG:-}" != "developer" ] || echo -e "D: $*" >&2
+}
+
+db_settitle neurodebian/title
+
+if [ "$1" = "configure" ]; then
+ # Must have been called in preinst state, so no nd-configurerepo
+ # tool is yet installed, thus delay asking questions to
+ # whenever will be called in postinst state
+ which nd-configurerepo 1>/dev/null 2>&1 || exit 0
+fi
+
+# Create temporary directory which will be reused
+export ND_AE_TEMPDIR=$(mktemp -d)
+trap "rm -rf \"$ND_AE_TEMPDIR\"" TERM INT EXIT
+
+neurodebian_releases="auto"
+
+# This implements a simple state machine so the back button can be handled.
+# taken from debconf demo example
+STATE=1
+while [ "$STATE" != 0 -a "$STATE" != 8 ]; do
+ case $STATE in
+ 1)
+ export neurodebian_releases="$(ND_IFS=', ' nd-configurerepo --print-releases)"
+ debug "releases: $neurodebian_releases"
+ db_subst neurodebian/release releases "$neurodebian_releases"
+ db_input medium neurodebian/release || true
+ ;;
+ 2)
+ export neurodebian_mirrors="$(ND_IFS=', ' nd-configurerepo --print-mirrors)"
+ debug "mirrors: $neurodebian_mirrors"
+ db_subst neurodebian/mirror mirrors "$neurodebian_mirrors"
+ db_input medium neurodebian/mirror || true
+ mirror_selection_ret="$RET"
+ debug "mirror select return: <$mirror_selection_ret>"
+ ;;
+ 3) db_input medium neurodebian/flavor || true ;;
+ 4) db_input medium neurodebian/components || true ;;
+ 5) db_input low neurodebian/overwrite || true ;;
+ 6) db_input low neurodebian/suffix || true ;;
+ 7) db_input medium neurodebian/run-update-note || true ;;
+ esac
+
+ if db_go; then
+# Ubuntus managed to remove netselect "to accompany apt-netselect"
+# https://bugs.launchpad.net/ubuntu/+source/netselect/+bug/337377
+# So for now remove this mandatory demanding of netselect for "best", and
+# rely on logic in nd-configurerepo to select default mirror (currently origin)
+# as the 'best'
+#
+# case $STATE in
+# 2)
+# db_metaget neurodebian/mirror value
+# selected_mirror="$RET"
+# # TODOs:
+# # - handle custom
+# # - separate out alias from url
+# debug "selected mirror: $selected_mirror"
+# if [ "$selected_mirror" = "best" ] && ! which netselect &>/dev/null; then
+# if [ "$mirror_selection_ret" = "30 question skipped" ]; then
+# # if the question was not even shown, we would
+# # not get a chance to specify mirror, thus
+# # better just fail altogether and demand intervention
+# db_input high neurodebian/netselect-cannot-be-used
+# exit 1
+# else
+# db_input high neurodebian/netselect-not-found
+# continue;
+# fi
+# fi
+# esac
+ STATE=$(($STATE + 1))
+ else
+ STATE=$(($STATE - 1))
+ fi
+done
+
+db_stop
+
--- /dev/null
+tools/nd-configurerepo usr/bin
--- /dev/null
+#!/bin/bash
+
+set -e
+
+. /usr/share/debconf/confmodule
+
+
+case "$1" in
+ configure)
+ # obtain all the options and call nd-configurerepo
+ opts="--do-not-update"
+ db_get neurodebian/release; [ "$RET" = "auto" ] || opts+=" -r '$RET'"
+ db_get neurodebian/mirror; nd_mirror="${RET##* }" # get just a url if it came together with alias
+ db_get neurodebian/flavor; nd_flavor="$RET"
+ db_get neurodebian/components; nd_components="${RET// /}"
+
+ db_get neurodebian/overwrite; [ "$RET" = "true" ] && opts+=" --overwrite" || :
+ db_get neurodebian/suffix; [ "$RET" = "" ] || opts+=" --suffix='$RET'" || :
+
+ eval nd-configurerepo -m "$nd_mirror" -c "$nd_components" $opts
+ ;;
+ abort-upgrade|abort-remove|abort-deconfigure)
+ # nothing to do
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+#DEBHELPER#
--- /dev/null
+#!/bin/bash
+
+set -e
+
+case "$1" in
+ purge)
+ rm -f /etc/apt/sources.list.d/neurodebian.sources*.list
+ ;;
+
+ remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
+ ;;
+
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
--- /dev/null
+Template: neurodebian/title
+Type: title
+Description: NeuroDebian APT repository installer
+
+
+Template: neurodebian/release
+Type: select
+Choices: auto, ${releases}
+Default: auto
+Description: Release name of the base system
+ Specify for which Debian or Ubuntu release (e.g. wheezy or trusty).
+ .
+ If 'auto', Debian or Ubuntu release name will be deduced from
+ apt-cache policy.
+
+
+Template: neurodebian/mirror
+Type: select
+Choices: origin, best, custom, ${mirrors}
+Default: best
+Description: NeuroDebian mirror to use:
+ NeuroDebian project has a number of community-maintainer mirrors
+ around the globe.
+ .
+ If you do not know which mirror URL to choose, select among
+ .
+ - origin: original NeuroDebian repository
+ - best: will try to use netselect to select "closest" mirror.
+ Depending on the configuration of the firewall, and actual mirror
+ setup, might fail to select actually closest one. If netselect
+ is not available, default mirror (possibly 'origin') will be used.
+
+
+Template: neurodebian/flavor
+Type: select
+Choices: auto, libre, full
+Default: auto
+Description: NeuroDebian flavor to use:
+ NeuroDebian project adheres to Debian Free Software Guidelines and
+ has three areas of the archive in all suites/releases:
+ .
+ libre
+ only the DFSG-compliant materials
+ full
+ all three areas (main, contrib, non-free)
+ auto
+ determine which flavor to choose based on current output of
+ apt-cache policy ('full' -- if non-free (Debian) or multiverse
+ (Ubuntu) areas are enabled)
+
+Template: neurodebian/components
+Type: multiselect
+Choices: software, data, devel
+Default: software, data
+Description: Select NeuroDebian repository components to enable
+ NeuroDebian repository provides
+ .
+ software
+ Packages containing software packages, often backports of stable
+ software releases for previous Debian/Ubuntu releases
+ devel
+ Additional "bleeding edge" software packages, which might not be a
+ good fit for being enabled by default. (Similar to Debian
+ experimental)
+ data
+ Packages containing data (e.g. atlases, sample datasets), often
+ required by software packages. Should generally be enabled.
+
+
+Template: neurodebian/overwrite
+Type: boolean
+Default: true
+Description: Should existing NeuroDebian APT file be overridden?
+ If not allowed, configuration would fail if there is
+ an existing apt configuration file for the NeuroDebian.
+
+Template: neurodebian/suffix
+Type: string
+Default:
+Description: Additional suffix to use in the NeuroDebian APT file name
+ For instance if you would like to enable additional repository
+ (e.g. NeuroDebian devel) or release, without interfering with the
+ main/default configuration file.
+
+Template: neurodebian/run-update-note
+Type: note
+Description: Upon completion of installation invoke update in your APT frontend.
+ For the installed NeuroDebian APT configuration to take an effect,
+ list of packages needs to be updated. This needs to be done
+ "manually" (e.g. apt-get update) upon completion of installation of
+ the neurodebian package.
+
+Template: neurodebian/netselect-not-found
+Type: error
+Description: netselect tool was not found
+ Please install netselect tool first (apt-get install netselect) or
+ choose a specific mirror.
+
+Template: neurodebian/netselect-cannot-be-used
+Type: error
+Description: netselect tool was not found (no other mirror)
+ Please install netselect tool first (apt-get install netselect)
+ before installing/configuring this package, or run with a lower
+ DEBIAN_PRIORITY to choose a specific mirror.
+
apt_file=/etc/apt/sources.list.d/local.list
# clean up from a previous test
-dpkg --purge neurodebian-repository neurodebian-keyring || :
-echo PURGE | debconf-communicate neurodebian-repository || :
+dpkg --purge neurodebian neurodebian-keyring || :
+echo PURGE | debconf-communicate neurodebian || :
rm -rf /tmp/apt $apt_file;
mkdir -p /tmp/apt; cd /tmp/apt;
rm -f neurodebian-*deb; apt-get update -y; apt-get install -y wget;
-wget http://www.onerussian.com/tmp/neurodebian-repository_0.33~a1_all.deb;
+wget http://www.onerussian.com/tmp/neurodebian_0.33~a1_all.deb;
wget http://www.onerussian.com/tmp/neurodebian-keyring_0.33~a1_all.deb;
# generate APT repo
# Add it to the list of available
echo "deb file:///tmp/apt ./" >| $apt_file; apt-get update
# Install the beast
-apt-get install -y --allow-unauthenticated neurodebian-repository
+apt-get install -y --allow-unauthenticated neurodebian
# Verify that it has correct entries
# Very cruel way to figure out the default release. Would fail if
# options, such as multiarch, are specified after deb
grep -E '^deb\s+http.* data main\s*$' /etc/apt/sources.list.d/neurodebian.sources.list
# May be even retrospect stored debconf configuration
apt-get install debconf-utils
-debconf-get-selections | grep neurodebian-repository/release.*select.*auto
+debconf-get-selections | grep neurodebian/release.*select.*auto
# And apt-get must be working
apt-get update
# Make sure it is active
projects / neurodebian.git / commitdiff