neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-sklearn python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban
  25  python-pandas neurodebian numdiff nuitka pytables
  26
  27 # Information about prospective packages to be imported from taskfiles
  28 prospective =
  29  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  35  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  36  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  37  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  38
  39 [blend package aliases]
  40 # alias a package name from a blend taskfile to an arbitray number of additional
  41 # package names -- if the original name should appear in the package list it has
  42 # to be added as an alias as well
  43 cctools = coop-computing-tools
  44 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  45 eeglab = matlab-eeglab11 eeglab11-sampledata
  46 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  47 fslview = fslview fslview-doc
  48 python-mvpa = python-mvpa python-mvpa2
  49 libgiftiio-dev = libgiftiio-dev gifti-bin
  50 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  51 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  52 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  53 spm8 = matlab-spm8 spm8-data spm8-doc
  54 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  55 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  56 openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg
  57 pandas = python-pandas
  58 pysurfer = python-surfer
  59 pyxnat = python-pyxnat
  60 openwalnut = openwalnut-qt4
  61 neurodebian = neurodebian-dev neurodebian-desktop neurodebian-keyring neurodebian-popularity-contest neurodebian-guest-additions
  62 pytables = python-tables
  63 isis = isis-utils libisis-core-dev python-isis libisis-ioplugins-common libisis-ioplugins-dicom libisis-qt4-dev
  64
  65 [mirrors]
  66 au = http://mirror.aarnet.edu.au/pub/neurodebian
  67 de = http://apsy.gse.uni-magdeburg.de/debian
  68 gr = http://neurobot.bio.auth.gr/neurodebian
  69 jp = http://neuroimaging.sakura.ne.jp/neurodebian
  70 us-ca = http://neurodeb.pirsquared.org
  71 us-nh = http://neuro.debian.net/debian
  72 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  73
  74 [mirror names]
  75 au = Australia (AARNET)
  76 de = Germany (University of Magdeburg)
  77 gr = Greece (Aristotle University of Thessaloniki)
  78 jp = Japan (Kiyotaka Nemoto)
  79 us-ca = USA-CA (Paul Ivanov, California)
  80 us-nh = USA-NH (Dartmouth College)
  81 us-tn = USA-TN (Vanderbilt)
  82
  83 [neurodebian]
  84 # Release files of all repositories to be contained in the website
  85 # Package info files for all these releases will be downloaded. A long list
  86 # of releases makes a website update a lot slower
  87 releases =
  88  http://neuro.debian.net/debian/dists/data/Release
  89  http://neuro.debian.net/debian/dists/hardy/Release
  90  http://neuro.debian.net/debian/dists/karmic/Release
  91  http://neuro.debian.net/debian/dists/lucid/Release
  92  http://neuro.debian.net/debian/dists/maverick/Release
  93  http://neuro.debian.net/debian/dists/natty/Release
  94  http://neuro.debian.net/debian/dists/oneiric/Release
  95  http://neuro.debian.net/debian/dists/lenny/Release
  96  http://neuro.debian.net/debian/dists/squeeze/Release
  97  http://neuro.debian.net/debian/dists/wheezy/Release
  98  http://neuro.debian.net/debian/dists/sid/Release
  99
 100 [release codenames]
 101 # each item here will result in the respective release being advertised
 102 # on the website, i.e. sources.list being available and config form contains
 103 # a corresponding item -- please prune an entry when a release is no longer
 104 # supported
 105 # the 'data' entry should not be changed, as this exact setting also serves as
 106 # a test condition in the DDE code
 107 data = Datasets (data)
 108 #etch = Debian GNU/Linux 4.0 (etch)
 109 lenny = Debian GNU/Linux 5.0 (lenny)
 110 squeeze = Debian GNU/Linux 6.0 (squeeze)
 111 wheezy = Debian testing (wheezy)
 112 sid = Debian unstable (sid)
 113 # EOL: May 12 2011 (Desktop) April 2013 (Server)
 114 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
 115 # EOL: Oct 23 2010
 116 #jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
 117 # EOL: April 2011
 118 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
 119 # EOL: April 2013 (Desktop) April 2015 (Server)
 120 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
 121 # EOL: April 2012
 122 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
 123 # EOL: October 2012
 124 natty = Ubuntu 11.04 "Natty Narwhal" (natty)
 125 # EOL: April 2013
 126 oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric)
 127
 128 [release backport ids]
 129 # the purpose of these ids is to have version suffixes for backported packages
 130 # that allow proper sorting (upgradability) across distribution releases
 131 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 132 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 133 data = nd
 134 etch = nd40
 135 lenny = nd50
 136 squeeze = nd60
 137 wheezy = nd70
 138 sid = nd
 139 hardy = nd08.04
 140 intrepid = nd08.10
 141 jaunty = nd09.04
 142 karmic = nd09.10
 143 lucid = nd10.04
 144 maverick = nd10.10
 145 natty = nd11.04
 146 oneiric = nd11.10
 147
 148 [nitrc ids]
 149 afni = 23
 150 ants = 130
 151 camino = 253
 152 caret = 34
 153 connectomeviewer = 355
 154 dicomnifti = 218
 155 fsl = 25
 156 fslview = 25
 157 gifti-bin = 75
 158 imagej = 256
 159 itksnap = 110
 160 jist = 228
 161 libminc-dev = 129
 162 libgiftiio-dev = 75
 163 libnifti2 = 26
 164 libnifti-dev = 26
 165 matlab-spm8 = 24
 166 minc-tools = 129
 167 mipav = 70
 168 mitools = 153
 169 mricron = 152
 170 mrtrix = 128
 171 nifti-bin = 26
 172 odin = 153
 173 python-mvpa = 162
 174 python-nipype = 325
 175 python-surfer = 517
 176 python-pyxnat = 453
 177 slicer = 50
 178 spm8 = 24
 179 voxbo = 73
 180 openmeeg = 514
 181