neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban
  25  python-pandas
  26
  27 # Information about prospective packages to be imported from taskfiles
  28 prospective =
  29  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  35  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  36  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  37  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  38
  39 [blend package aliases]
  40 # alias a package name from a blend taskfile to an arbitray number of additional
  41 # package names -- if the original name should appear in the package list it has
  42 # to be added as an alias as well
  43 cctools = coop-computing-tools
  44 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  45 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  46 fslview = fslview fslview-doc
  47 python-mvpa = python-mvpa python-mvpa-snapshot python-mvpa2
  48 libgiftiio-dev = libgiftiio-dev gifti-bin
  49 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  50 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  51 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  52 spm8 = matlab-spm8 spm8-data spm8-doc
  53 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  54 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  55 openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg
  56 pandas = python-pandas
  57 pysurfer = python-surfer
  58 pyxnat = python-pyxnat
  59 openwalnut = openwalnut-qt4
  60
  61 [mirrors]
  62 de = http://apsy.gse.uni-magdeburg.de/debian
  63 gr = http://neurobot.bio.auth.gr/neurodebian
  64 us-ca = http://neurodeb.pirsquared.org
  65 us-nh = http://neuro.debian.net/debian
  66 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  67
  68 [mirror names]
  69 de = Germany (University of Magdeburg)
  70 gr = Greece (Aristotle University of Thessaloniki)
  71 us-ca = USA-CA (Paul Ivanov, California)
  72 us-nh = USA-NH (Dartmouth College)
  73 us-tn = USA-TN (Vanderbilt)
  74
  75 [neurodebian]
  76 # Release files of all repositories to be contained in the website
  77 releases =
  78  http://neuro.debian.net/debian/dists/data/Release
  79  http://neuro.debian.net/debian/dists/dapper/Release
  80  http://neuro.debian.net/debian/dists/gutsy/Release
  81  http://neuro.debian.net/debian/dists/hardy/Release
  82  http://neuro.debian.net/debian/dists/intrepid/Release
  83  http://neuro.debian.net/debian/dists/jaunty/Release
  84  http://neuro.debian.net/debian/dists/karmic/Release
  85  http://neuro.debian.net/debian/dists/lucid/Release
  86  http://neuro.debian.net/debian/dists/maverick/Release
  87  http://neuro.debian.net/debian/dists/natty/Release
  88  http://neuro.debian.net/debian/dists/oneiric/Release
  89  http://neuro.debian.net/debian/dists/etch/Release
  90  http://neuro.debian.net/debian/dists/lenny/Release
  91  http://neuro.debian.net/debian/dists/squeeze/Release
  92  http://neuro.debian.net/debian/dists/wheezy/Release
  93  http://neuro.debian.net/debian/dists/sid/Release
  94
  95 [release codenames]
  96 # the 'data' entry should not be changed, as this exact setting also serves as
  97 # a test condition in the DDE code
  98 data = Datasets (data)
  99 etch = Debian GNU/Linux 4.0 (etch)
 100 lenny = Debian GNU/Linux 5.0 (lenny)
 101 squeeze = Debian GNU/Linux 6.0 (squeeze)
 102 wheezy = Debian testing (wheezy)
 103 sid = Debian unstable (sid)
 104 # EOL: May 12 2011 (Desktop) April 2013 (Server)
 105 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
 106 # EOL: Oct 23 2010
 107 jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
 108 # EOL: April 2011
 109 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
 110 # EOL: April 2013 (Desktop) April 2015 (Server)
 111 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
 112 # EOL: April 2012
 113 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
 114 # EOL: October 2012
 115 natty = Ubuntu 11.04 "Natty Narwhal" (natty)
 116 # EOL: April 2013
 117 oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric)
 118
 119 [release backport ids]
 120 # the purpose of these ids is to have version suffixes for backported packages
 121 # that allow proper sorting (upgradability) across distribution releases
 122 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 123 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 124 data = nd
 125 etch = nd40
 126 lenny = nd50
 127 squeeze = nd60
 128 wheezy = nd70
 129 sid = nd
 130 hardy = nd08.04
 131 intrepid = nd08.10
 132 jaunty = nd09.04
 133 karmic = nd09.10
 134 lucid = nd10.04
 135 maverick = nd10.10
 136 natty = nd11.04
 137 oneiric = nd11.10
 138
 139 [nitrc ids]
 140 afni = 23
 141 ants = 130
 142 camino = 253
 143 caret = 34
 144 connectomeviewer = 355
 145 dicomnifti = 218
 146 fsl = 25
 147 fslview = 25
 148 gifti-bin = 75
 149 imagej = 256
 150 itksnap = 110
 151 jist = 228
 152 libminc-dev = 129
 153 libgiftiio-dev = 75
 154 libnifti2 = 26
 155 libnifti-dev = 26
 156 matlab-spm8 = 24
 157 minc-tools = 129
 158 mipav = 70
 159 mitools = 153
 160 mricron = 152
 161 mrtrix = 128
 162 nifti-bin = 26
 163 odin = 153
 164 python-mvpa = 162
 165 python-nipype = 325
 166 python-surfer = 517
 167 python-pyxnat = 453
 168 slicer = 50
 169 spm8 = 24
 170 voxbo = 73
 171 openmeeg = 514
 172