neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-sklearn python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban
  25  python-pandas python-skimage neurodebian numdiff nuitka pytables
  26  guacamole freeipmi remake vowpal-wabbit
  27
  28 # Information about prospective packages to be imported from taskfiles
  29 prospective =
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  35  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  36  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  37  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  38  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  39
  40 [blend package aliases]
  41 # alias a package name from a blend taskfile to an arbitray number of additional
  42 # package names -- if the original name should appear in the package list it has
  43 # to be added as an alias as well
  44 cctools = coop-computing-tools
  45 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  46 eeglab = matlab-eeglab11 eeglab11-sampledata
  47 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  48 fslview = fslview fslview-doc
  49 python-mvpa = python-mvpa python-mvpa2
  50 libgiftiio-dev = libgiftiio-dev gifti-bin
  51 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  52 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  53 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  54 spm8 = matlab-spm8 spm8-data spm8-doc
  55 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  56 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  57 openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg
  58 pandas = python-pandas
  59 pysurfer = python-surfer
  60 pyxnat = python-pyxnat
  61 openwalnut = openwalnut-qt4
  62 neurodebian = neurodebian-dev neurodebian-desktop neurodebian-keyring neurodebian-popularity-contest neurodebian-guest-additions
  63 pytables = python-tables
  64 isis = isis-utils libisis-core-dev python-isis libisis-ioplugins-common libisis-ioplugins-dicom libisis-qt4-dev
  65 guacamole = guacamole guacd libguac-dev libguac3 libguac-client-rdp guacamole-tomcat libguac-client-vnc0
  66 neo = python-neo
  67 openvibe = openvibe-bin openvibe-data openvibe-dev openvibe-libs openvibe-plugins
  68
  69 [mirrors]
  70 au = http://mirror.aarnet.edu.au/pub/neurodebian
  71 de-m = http://neurodebian.g-node.org
  72 de-md = http://neurodebian.ovgu.de/debian
  73 de-v = http://nd.zetatech.org
  74 gr = http://neurobot.bio.auth.gr/neurodebian
  75 jp = http://neuroimaging.sakura.ne.jp/neurodebian
  76 ua = http://www.neuro.webdisk.com.ua
  77 us-ca = http://neurodeb.pirsquared.org
  78 us-nh = http://neuro.debian.net/debian
  79 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  80
  81 [mirror names]
  82 au = Australia (AARNET)
  83 de-m = Germany (G-Node, LMU Munich)
  84 de-md = Germany (University of Magdeburg)
  85 de-v = Germany (Nikolaus Valentin Haenel, Vogtland)
  86 gr = Greece (Aristotle University of Thessaloniki)
  87 jp = Japan (Kiyotaka Nemoto)
  88 ua = Ukraine (Iaroslav Iurchenko)
  89 us-ca = USA-CA (Paul Ivanov, California)
  90 us-nh = USA-NH (Dartmouth College)
  91 us-tn = USA-TN (Vanderbilt)
  92
  93 [neurodebian]
  94 # Release files of all repositories to be contained in the website
  95 # Package info files for all these releases will be downloaded. A long list
  96 # of releases makes a website update a lot slower
  97 releases =
  98  http://neuro.debian.net/debian/dists/data/Release
  99  http://neuro.debian.net/debian/dists/hardy/Release
 100  http://neuro.debian.net/debian/dists/karmic/Release
 101  http://neuro.debian.net/debian/dists/lucid/Release
 102  http://neuro.debian.net/debian/dists/maverick/Release
 103  http://neuro.debian.net/debian/dists/natty/Release
 104  http://neuro.debian.net/debian/dists/oneiric/Release
 105  http://neuro.debian.net/debian/dists/precise/Release
 106  http://neuro.debian.net/debian/dists/quantal/Release
 107  http://neuro.debian.net/debian/dists/squeeze/Release
 108  http://neuro.debian.net/debian/dists/wheezy/Release
 109  http://neuro.debian.net/debian/dists/sid/Release
 110
 111 [release codenames]
 112 # each item here will result in the respective release being advertised
 113 # on the website, i.e. sources.list being available and config form contains
 114 # a corresponding item -- please prune an entry when a release is no longer
 115 # supported
 116 # the 'data' entry should not be changed, as this exact setting also serves as
 117 # a test condition in the DDE code
 118 data = Datasets (data)
 119 #etch = Debian GNU/Linux 4.0 (etch)
 120 lenny = Debian GNU/Linux 5.0 (lenny)
 121 squeeze = Debian GNU/Linux 6.0 (squeeze)
 122 wheezy = Debian testing (wheezy)
 123 sid = Debian unstable (sid)
 124 # EOL: May 12 2011 (Desktop) April 2013 (Server)
 125 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
 126 # EOL: Oct 23 2010
 127 #jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
 128 # EOL: April 2011
 129 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
 130 # EOL: April 2013 (Desktop) April 2015 (Server)
 131 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
 132 # EOL: April 2012
 133 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
 134 # EOL: October 2012
 135 natty = Ubuntu 11.04 "Natty Narwhal" (natty)
 136 # EOL: April 2013
 137 oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric)
 138 # EOL: April 2017 (LTS)
 139 precise = Ubuntu 12.04 LTS "Precise Pangolin" (precise)
 140 # EOL: April 2014
 141 quantal = Ubuntu 12.10 "Quantal Quetzal" (quantal)
 142
 143 [release backport ids]
 144 # the purpose of these ids is to have version suffixes for backported packages
 145 # that allow proper sorting (upgradability) across distribution releases
 146 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 147 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 148 data = nd
 149 etch = nd40
 150 lenny = nd50
 151 squeeze = nd60
 152 wheezy = nd70
 153 sid = nd
 154 hardy = nd08.04
 155 intrepid = nd08.10
 156 jaunty = nd09.04
 157 karmic = nd09.10
 158 lucid = nd10.04
 159 maverick = nd10.10
 160 natty = nd11.04
 161 oneiric = nd11.10
 162 precise = nd12.04
 163 quantal = nd12.10
 164
 165 [nitrc ids]
 166 afni = 23
 167 ants = 130
 168 camino = 253
 169 caret = 34
 170 cmtk = 212
 171 connectomeviewer = 355
 172 dicomnifti = 218
 173 fsl = 25
 174 fslview = 25
 175 gifti-bin = 75
 176 imagej = 256
 177 itksnap = 110
 178 jist = 228
 179 libminc-dev = 129
 180 libgiftiio-dev = 75
 181 libnifti2 = 26
 182 libnifti-dev = 26
 183 matlab-spm8 = 24
 184 minc-tools = 129
 185 mipav = 70
 186 mitools = 153
 187 mricron = 152
 188 mrtrix = 128
 189 nifti-bin = 26
 190 odin = 153
 191 python-mvpa = 162
 192 python-nipype = 325
 193 python-surfer = 517
 194 python-pyxnat = 453
 195 slicer = 50
 196 spm8 = 24
 197 voxbo = 73
 198 openmeeg = 514
 199 bioimagesuite = 51
 200